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doc/conf.py

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# source_suffix = ['.rst', '.md']
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source_suffix = '.rst'
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# The master toctree document.
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master_doc = 'index'
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# The main toctree document.
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main_doc = 'index'
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# General information about the project.
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project = u'Voxelwise modeling tutorials'
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# (source start file, target name, title,
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# author, documentclass [howto, manual, or own class]).
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latex_documents = [
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(master_doc, 'Tutorials.tex', u'Tutorials Documentation',
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(main_doc, 'Tutorials.tex', u'Tutorials Documentation',
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u'Gallant lab', 'manual'),
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]
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# -- Options for manual page output ---------------------------------------
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# One entry per manual page. List of tuples
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# (source start file, name, description, authors, manual section).
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man_pages = [(master_doc, 'tutorials', u'Tutorials Documentation', [author], 1)
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man_pages = [(main_doc, 'tutorials', u'Tutorials Documentation', [author], 1)
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]
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# -- Options for Texinfo output -------------------------------------------
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# (source start file, target name, title, author,
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# dir menu entry, description, category)
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texinfo_documents = [
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(master_doc, 'Tutorials', u'Tutorials Documentation', author, 'Tutorials',
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(main_doc, 'Tutorials', u'Tutorials Documentation', author, 'Tutorials',
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'One line description of project.', 'Miscellaneous'),
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]
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setup.py

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"networkx",
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"nltk",
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"pycortex",
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"himalaya @ git+https://github.com/gallantlab/himalaya@master#egg=himalaya", # noqa
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"himalaya @ git+https://github.com/gallantlab/himalaya@main#egg=himalaya",
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"pymoten @ git+https://github.com/gallantlab/pymoten@master#egg=pymoten",
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]
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tutorials/README.rst

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(If you are looking for some Jupyter notebooks, check the `notebooks
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<https://github.com/gallantlab/voxelwise_tutorials/tree/master/tutorials/notebooks>`_
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<https://github.com/gallantlab/voxelwise_tutorials/tree/main/tutorials/notebooks>`_
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directory.)

tutorials/movies_3T/04_plot_motion_energy_model.py

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ylabel='motion energy model')
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plt.show()
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###############################################################################
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# Interestingly, the well predicted voxels are different in the two models.
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# To further describe these differences, we can plot both performances on the

voxelwise_tutorials/delayer.py

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"""Scikit-learn Transformer to add delays to features.
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This assumes that the samples are ordered in time.
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Adding a delay of 0 corresponds to leave the features unchanged.
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Adding a delay of 0 corresponds to leaving the features unchanged.
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Adding a delay of 1 corresponds to using features from the previous sample.
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Adding multiple delays can be used to take into account the slow

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