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Fix citations [skip ci]
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tutorials/notebooks/shortclips/03_compute_explainable_variance.ipynb

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"In the literature, the explainable variance is also known as the *signal\n",
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"power*. \n",
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"\n",
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"For more information, see {cite:t}`Sahani2002`, {cite:t}`Hsu2004`, and {cite:t}`Schoppe2016`."
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"For more information, see {cite}`Sahani2002,Hsu2004,Schoppe2016`."
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tutorials/notebooks/shortclips/05_fit_wordnet_model.ipynb

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"Before fitting an encoding model, the fMRI responses are typically z-scored over time. This normalization step is performed for two reasons.\n",
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"First, the regularized regression methods used to estimate encoding models generally assume the data to be normalized {cite:t}`Hastie2009`. \n",
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"First, the regularized regression methods used to estimate encoding models generally assume the data to be normalized {cite}`Hastie2009`. \n",
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"Second, the temporal mean and standard deviation of a voxel are typically considered uninformative in fMRI because they can vary due to factors unrelated to the task, such as differences in signal-to-noise ratio (SNR).\n",
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"\n",
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"To preserve each run independent from the others, we z-score each run separately."
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"Now, let's define the model pipeline.\n",
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"\n",
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"With regularized linear regression models, it is generally recommended to normalize \n",
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"(z-score) both the responses and the features before fitting the model {cite:t}`Hastie2009`. \n",
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"(z-score) both the responses and the features before fitting the model {cite}`Hastie2009`. \n",
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"Z-scoring corresponds to removing the temporal mean and dividing by the temporal standard deviation.\n",
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"We already z-scored the fMRI responses after loading them, so now we need to specify\n",
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"in the model how to deal with the features. \n",

tutorials/notebooks/shortclips/vem_tutorials_merged_for_colab.ipynb

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"In the literature, the explainable variance is also known as the *signal\n",
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"power*. \n",
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"\n",
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"For more information, see {cite:t}`Sahani2002`, {cite:t}`Hsu2004`, and {cite:t}`Schoppe2016`."
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"For more information, see {cite}`Sahani2002,Hsu2004,Schoppe2016`."
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"metadata": {},
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"Before fitting an encoding model, the fMRI responses are typically z-scored over time. This normalization step is performed for two reasons.\n",
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"First, the regularized regression methods used to estimate encoding models generally assume the data to be normalized {cite:t}`Hastie2009`. \n",
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"First, the regularized regression methods used to estimate encoding models generally assume the data to be normalized {cite}`Hastie2009`. \n",
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"Second, the temporal mean and standard deviation of a voxel are typically considered uninformative in fMRI because they can vary due to factors unrelated to the task, such as differences in signal-to-noise ratio (SNR).\n",
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"\n",
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"To preserve each run independent from the others, we z-score each run separately."
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"Now, let's define the model pipeline.\n",
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"\n",
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"With regularized linear regression models, it is generally recommended to normalize \n",
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"(z-score) both the responses and the features before fitting the model {cite:t}`Hastie2009`. \n",
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"(z-score) both the responses and the features before fitting the model {cite}`Hastie2009`. \n",
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"Z-scoring corresponds to removing the temporal mean and dividing by the temporal standard deviation.\n",
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"We already z-scored the fMRI responses after loading them, so now we need to specify\n",
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"in the model how to deal with the features. \n",

tutorials/notebooks/shortclips/vem_tutorials_merged_for_colab_model_fitting.ipynb

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"In the literature, the explainable variance is also known as the *signal\n",
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"power*. \n",
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"\n",
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"For more information, see {cite:t}`Sahani2002`, {cite:t}`Hsu2004`, and {cite:t}`Schoppe2016`."
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"For more information, see {cite}`Sahani2002,Hsu2004,Schoppe2016`."
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"Before fitting an encoding model, the fMRI responses are typically z-scored over time. This normalization step is performed for two reasons.\n",
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"First, the regularized regression methods used to estimate encoding models generally assume the data to be normalized {cite:t}`Hastie2009`. \n",
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"First, the regularized regression methods used to estimate encoding models generally assume the data to be normalized {cite}`Hastie2009`. \n",
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"Second, the temporal mean and standard deviation of a voxel are typically considered uninformative in fMRI because they can vary due to factors unrelated to the task, such as differences in signal-to-noise ratio (SNR).\n",
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"\n",
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"To preserve each run independent from the others, we z-score each run separately."
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"Now, let's define the model pipeline.\n",
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"\n",
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"With regularized linear regression models, it is generally recommended to normalize \n",
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"(z-score) both the responses and the features before fitting the model {cite:t}`Hastie2009`. \n",
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"(z-score) both the responses and the features before fitting the model {cite}`Hastie2009`. \n",
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"Z-scoring corresponds to removing the temporal mean and dividing by the temporal standard deviation.\n",
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"We already z-scored the fMRI responses after loading them, so now we need to specify\n",
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"in the model how to deal with the features. \n",

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