fix clippy and make tests CI-ready

Author: ayobi

src/select.rs

@@ -182,7 +182,7 @@ fn best_chain_one_strand(
                 continue;
             }
             for c58 in &s58e {
-                if !(b.ivl.start < c58.ivl.start) {
+                if b.ivl.start >= c58.ivl.start {
                     continue;
                 }
                 for d in &lsu {

src/tblout.rs

@@ -106,12 +106,6 @@ pub struct TopKHits {
 }
 
 impl TopKHits {
-    pub fn new() -> Self {
-        Self {
-            bins: std::array::from_fn(|_| Vec::new()),
-        }
-    }
-
     /// Compatibility helper: gather all stored hits into one small Vec
     /// (max size = 8 * K).
     pub fn flatten(&self) -> Vec<TblHit> {
@@ -165,10 +159,10 @@ pub fn stream_topk_tblout(
         };
         total_tblout_hits += 1;
 
-        if let Some(cut) = evalue_cutoff {
-            if hit.evalue > cut {
-                continue;
-            }
+        if let Some(cut) = evalue_cutoff
+            && hit.evalue > cut
+        {
+            continue;
         }
 
         let Some(anchor) = select::classify(&hit.model) else {
@@ -179,7 +173,8 @@ pub fn stream_topk_tblout(
         let rid = hit.read_id.clone();
         let idx = bin_index(anchor, hit.strand);
 
-        let entry = map.entry(rid).or_insert_with(TopKHits::new);
+        let entry = map.entry(rid).or_default();
+
         push_topk(&mut entry.bins[idx], hit, k);
     }
 

src/trim.rs

@@ -265,19 +265,19 @@ pub fn trim_all(
             let mut wrote = false;
 
             for (i, maybe_plan) in plan_array.iter().enumerate() {
-                if let Some(plan) = maybe_plan {
-                    if let Some((out_seq, out_qual)) = extract_trimmed(&rec, plan) {
-                        let out_id = trimmed_id(&rec.id, outputs[i].tag, plan);
-                        outputs[i]
-                            .writer
-                            .write_record(&out_id, &out_seq, out_qual.as_deref())?;
-                        wrote = true;
-                        match i {
-                            0 => stats.kept_full += 1,
-                            1 => stats.kept_its1 += 1,
-                            2 => stats.kept_its2 += 1,
-                            _ => unreachable!(),
-                        }
+                if let Some(plan) = maybe_plan
+                    && let Some((out_seq, out_qual)) = extract_trimmed(&rec, plan)
+                {
+                    let out_id = trimmed_id(&rec.id, outputs[i].tag, plan);
+                    outputs[i]
+                        .writer
+                        .write_record(&out_id, &out_seq, out_qual.as_deref())?;
+                    wrote = true;
+                    match i {
+                        0 => stats.kept_full += 1,
+                        1 => stats.kept_its1 += 1,
+                        2 => stats.kept_its2 += 1,
+                        _ => unreachable!(),
                     }
                 }
             }