add fungal HMM (F.hmm) and update dockerfile #29
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| name: CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| jobs: | |
| test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Install dependencies (Ubuntu) | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get update && sudo apt-get install -y hmmer | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Install Rust toolchain | |
| uses: actions-rust-lang/setup-rust-toolchain@v1 | |
| with: | |
| toolchain: stable | |
| components: rustfmt, clippy | |
| - name: Cache Rust builds | |
| uses: Swatinem/rust-cache@v2 | |
| - name: Check formatting | |
| run: cargo fmt --all -- --check | |
| - name: Run clippy | |
| run: cargo clippy --all-targets --all-features -- -D warnings | |
| - name: Run tests | |
| run: cargo test --all-features | |