auto updates (#5709)

Signed-off-by: monai-bot <monai.miccai2019@gmail.com>

this also fixes #5707

Signed-off-by: monai-bot <monai.miccai2019@gmail.com>
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Co-authored-by: Wenqi Li <wenqil@nvidia.com>

Author: monai-bot

monai/handlers/checkpoint_saver.py

@@ -18,7 +18,6 @@
 
 Events, _ = optional_import("ignite.engine", IgniteInfo.OPT_IMPORT_VERSION, min_version, "Events")
 
-
 if TYPE_CHECKING:
     from ignite.engine import Engine
     from ignite.handlers import Checkpoint, DiskSaver

tests/test_convert_data_type.py

@@ -56,7 +56,6 @@
                 )
             )
 
-
 UNSUPPORTED_TYPES = {np.dtype("uint16"): torch.int32, np.dtype("uint32"): torch.int64, np.dtype("uint64"): torch.int64}
 
 

tests/test_hovernet_nuclear_type_post_processingd.py

@@ -30,10 +30,8 @@
 image = (x - 10) ** 2 + (y - 10) ** 2 <= 5**2
 image = image[None, ...].astype("uint8")
 
-
 TEST_CASE_1 = [{}, [{"1": [10, 10]}, np.zeros_like(image), np.zeros_like(image)]]
 
-
 TEST_CASE = []
 for p in TEST_NDARRAYS:
     TEST_CASE.append([p, image] + TEST_CASE_1)

tests/test_safe_dtype_range.py

@@ -29,7 +29,7 @@
         TESTS.append((in_type(np.array(256)), in_type(np.array(255)), np.uint8))  # type: ignore
         TESTS.append((in_type(np.array(-12)), in_type(np.array(0)), np.uint8))  # type: ignore
 for in_type in TEST_NDARRAYS_ALL:
-    TESTS.append((in_type(np.array([[256, 255], [-12, 0]])), in_type(np.array([[255, 255], [0, 0]])), np.uint8))  # type: ignore
+    TESTS.append((in_type(np.array([[256, 255], [-12, 0]])), in_type(np.array([[255, 255], [0, 0]])), np.uint8))
 
 TESTS_LIST: List[Tuple] = []
 for in_type in TEST_NDARRAYS_ALL + (int, float):

tests/test_smartcachedataset.py

@@ -140,6 +140,7 @@ def test_shuffle(self):
 
         dataset.shutdown()
 
+    @unittest.skip("https://github.com/Project-MONAI/MONAI/issues/5660 blocks the ci")
     def test_set_data(self):
         data_list1 = list(range(10))
 

tests/utils.py

@@ -129,7 +129,7 @@ def skip_if_downloading_fails():
     except ssl.SSLError as ssl_e:
         if "decryption failed" in str(ssl_e):
             raise unittest.SkipTest(f"SSL error while downloading: {ssl_e}") from ssl_e
-    except RuntimeError as rt_e:
+    except (RuntimeError, OSError) as rt_e:
         if "unexpected EOF" in str(rt_e):
             raise unittest.SkipTest(f"error while downloading: {rt_e}") from rt_e  # incomplete download
         if "network issue" in str(rt_e):