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filippomcfilippomc
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Merge pull request #580 from MetaCell/feature/571
Feature/571
2 parents 4fa3b71 + 5386f31 commit cd42eaa

6 files changed

Lines changed: 233 additions & 1 deletion

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‎netpyne_ui/netpyne_geppetto.py‎

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Original file line numberDiff line numberDiff line change
@@ -882,7 +882,8 @@ def getAvailablePlots(self):
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"iplotConn",
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"granger",
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"plotDipole",
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"plotEEG"
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"plotEEG",
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"plotRateSpectrogram"
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]
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return [plot for plot in plots if plot not in list(self.simConfig.analysis.keys())]

‎webapp/components/definition/plots/NetPyNENewPlot.js‎

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@@ -101,6 +101,13 @@ export default class NetPyNENewPlot extends React.Component {
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>
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Granger Causality Plot
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</MenuItem>
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<MenuItem
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key="plotRateSpectrogram"
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value="plotRateSpectrogram"
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onClick={() => this.handleClick('plotRateSpectrogram')}
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>
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Rate Spectrogram Plot
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</MenuItem>
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</Menu>
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</div>
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);

‎webapp/components/definition/plots/NetPyNEPlots.js‎

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@@ -10,6 +10,7 @@ import PlotRaster from './plotTypes/PlotRaster';
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import PlotTraces from './plotTypes/PlotTraces';
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import PlotGranger from './plotTypes/PlotGranger';
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import PlotRatePSD from './plotTypes/PlotRatePSD';
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import PlotRateSpectrogram from './plotTypes/PlotRateSpectrogram'
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import PlotSpikeHist from './plotTypes/PlotSpikeHist';
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import PlotSpikeStats from './plotTypes/PlotSpikeStats';
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import NetPyNENewPlot from './NetPyNENewPlot';
@@ -123,6 +124,9 @@ export default class NetPyNEPlots extends React.Component {
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case 'granger':
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selectedPlot = <PlotGranger />;
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break;
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case 'plotRateSpectrogram':
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selectedPlot = <PlotRateSpectrogram />;
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break;
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}
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return (

‎webapp/components/definition/plots/plotTypes/PlotRateSpectrogram.js‎

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@@ -0,0 +1,116 @@
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import React, { Component } from 'react';
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import Box from '@material-ui/core/Box';
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import {
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NetPyNEInclude,
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NetPyNEField,
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SelectField,
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NetPyNECheckbox,
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NetPyNETextField,
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} from 'netpyne/components';
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import TimeRange from '../TimeRange';
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export default class PlotRateSpectrogram extends React.Component {
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constructor (props) {
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super(props);
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this.state = { checked: false };
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this.handleCheckChange = this.handleCheckChange.bind(this);
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}
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handleCheckChange = (event, isCheck) => {
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this.setState({ Checked: isCheck });
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};
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render () {
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const tag = 'simConfig.analysis[\'plotRateSpectrogram\']';
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return (
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<Box className="scrollbar scrollchild" mt={1}>
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<NetPyNEInclude
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id="simConfig.analysis.plotRateSpectrogram.include"
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model={`${tag}['include']`}
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defaultOptions={['all', 'allCells', 'allNetStims']}
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initialValue="all"
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/>
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<NetPyNEField id="simConfig.analysis.plotRateSpectrogram.timeRange">
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<TimeRange model={`${tag}['timeRange']`} />
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</NetPyNEField>
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<NetPyNEField id="simConfig.analysis.plotRateSpectrogram.binSize">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`${tag}['binSize']`}
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/>
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</NetPyNEField>
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<NetPyNEField id="simConfig.analysis.plotRateSpectrogram.minFreq">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`${tag}['minFreq']`}
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/>
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</NetPyNEField>
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<NetPyNEField id="simConfig.analysis.plotRateSpectrogram.maxFreq">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`${tag}['maxFreq']`}
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/>
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</NetPyNEField>
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<NetPyNEField id="simConfig.analysis.plotRateSpectrogram.stepFreq">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`${tag}['stepFreq']`}
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/>
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</NetPyNEField>
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<NetPyNEField
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id="simConfig.analysis.plotRateSpectrogram.transformMethod"
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className="listStyle"
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>
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<SelectField model={`${tag}['transformMethod']`} />
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</NetPyNEField>
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{/* <NetPyNEField id="simConfig.analysis.plotRateSpectrogram.fontSize">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`${tag}['fontSize']`}
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/>
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</NetPyNEField>
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<NetPyNEField id="simConfig.analysis.plotRateSpectrogram.figSize">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`${tag}['figSize']`}
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/>
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</NetPyNEField>
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<NetPyNEField
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id="simConfig.analysis.plotRateSpectrogram.saveData"
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className="netpyneCheckbox"
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>
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<NetPyNECheckbox model={`${tag}['saveData']`} />
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</NetPyNEField>
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<NetPyNEField
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id="simConfig.analysis.plotRateSpectrogram.saveFig"
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className="netpyneCheckbox"
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>
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<NetPyNECheckbox model={`${tag}['saveFig']`} />
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</NetPyNEField>
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<NetPyNEField
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id="simConfig.analysis.plotRateSpectrogram.showFig"
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className="netpyneCheckbox"
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>
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<NetPyNECheckbox model={`${tag}['showFig']`} />
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</NetPyNEField> */}
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</Box>
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);
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}
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}

‎webapp/constants.js‎

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@@ -444,6 +444,33 @@ export const PLOT_WIDGETS = {
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},
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},
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},
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plotRateSpectrogram: {
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id: 'plotRateSpectrogram',
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name: 'Rate Spectrogram Plot',
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status: WidgetStatus.MINIMIZED,
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component: 'Plot',
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hideOnClose: true,
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panelName: MINIMIZED_PANEL,
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defaultPanel: 'plotPanel',
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enableRename: false,
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initialized: false,
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disabled: true,
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method: {
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plotKey: 'plotRateSpectrogram',
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plotMethod: 'plotRateSpectrogram',
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plotType: false,
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},
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pos: 15,
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config: {
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id: 'plotRateSpectrogram',
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name: 'Rate Spectrogram Plot',
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method: {
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plotKey: 'plotRateSpectrogram',
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plotMethod: 'plotRateSpectrogram',
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plotType: false,
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},
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},
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},
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};
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export const DEFAULT_NETWORK_WIDGETS = {

‎webapp/static/icons/plotRateSpectrogram.svg‎

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