Merge pull request #420 from MetaCell/feature/meta_migration

Feature/meta migration

Author: filippomc

.gitignore

@@ -13,6 +13,7 @@ init.py
 webapp/node_modules
 webapp/geppetto-client
 webapp/build
+webapp/.yalc
 workspace
 netpyne_workspace
 tests/frontend/e2e/node_modules
@@ -25,4 +26,5 @@ utilities/x86_64
 *.iml
 x86_64
 .jupyter-config
-venv
+venv
+node_modules

netpyne_ui/__init__.py

@@ -1,4 +1,14 @@
 from jupyter_geppetto.webapi import RouteManager
 from netpyne_ui import api
+import sentry_sdk
+
+sentry_sdk.init(
+    "https://d8bf7e40eec34cb9891f6dd8207b5e83@sentry.metacell.us/6",
+
+    # Set traces_sample_rate to 1.0 to capture 100%
+    # of transactions for performance monitoring.
+    # We recommend adjusting this value in production.
+    traces_sample_rate=1.0,
+)
 
 RouteManager.add_controller(api.NetPyNEController)

netpyne_ui/experiments.py

@@ -154,7 +154,7 @@ def get_model_specification(name: str, trial: str) -> dict:
     """
     path = get_trial_output_path(name, trial, fallback=True)
     if path is None or not os.path.exists(path):
-        raise ExperimentsError(f"Trial file {path} not found")
+        raise ExperimentsError(f"Condition file {path} not found")
 
     with open(path, "r") as f:
         trial_output = json.load(f)
@@ -273,7 +273,7 @@ def onerror(func, path, exc_info):
 
 
 def _create_base_model_trial() -> model.Trial:
-    return model.Trial(name="Trial 1", id=BASE_TRIAL_ID)
+    return model.Trial(name="Condition 1", id=BASE_TRIAL_ID)
 
 
 def _create_trials(experiment: model.Experiment) -> List[model.Trial]:
@@ -315,7 +315,7 @@ def _create_trials(experiment: model.Experiment) -> List[model.Trial]:
 
         filename = combinations["filenames"][combIdx][1:]
         indices = combinations["indices"][combIdx]
-        name = f"Trial {combIdx + 1}"
+        name = f"Condition {combIdx + 1}"
 
         trials.append(
             model.Trial(name=name, params=params, indices=indices, id=filename)

netpyne_ui/netpyne_geppetto.py

@@ -138,7 +138,7 @@ def viewExperimentResult(self, payload: dict):
 
         file = experiments.get_trial_output_path(name, trial)
         if file is None or not os.path.exists(file):
-            return utils.getJSONError(f"Couldn't find output file of trial. Please take a look at the simulation log.", "")
+            return utils.getJSONError(f"Couldn't find output file of condition. Please take a look at the simulation log.", "")
 
         if self.doIhaveInstOrSimData()['haveInstance']:
             sim.clearAll()
@@ -184,7 +184,7 @@ def instantiateNetPyNEModelInGeppetto(self, args):
                     self.geppetto_model = self.model_interpreter.getGeppettoModel(netpyne_model)
 
                 return json.loads(GeppettoModelSerializer.serialize(self.geppetto_model))
-        except Exception:
+        except Exception as e:
             message = "Error while instantiating the NetPyNE model"
             logging.exception(message)
             return utils.getJSONError(message, sys.exc_info())