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aranegaaranega
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netpyne-172 Add layouts for all patterns
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Lines changed: 177 additions & 33 deletions

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‎netpyne_ui/netpyne_geppetto.py‎

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -915,6 +915,9 @@ def getAvailableCellModels(self):
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def getAvailableCellModels(self):
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return ["", "VecStim", "NetStim", "IntFire1"]
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def getAvailableStimulationDistribution(self):
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return ["normal", "uniform"]
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def getAvailableStimulationPattern(self):
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# self.netParams.popParams[name]['spikePattern'] = {}
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return ["", "rhythmic", "evoked", "poisson", "gauss"]

‎webapp/components/definition/populations/NetPyNEPopulation.js‎

Lines changed: 174 additions & 33 deletions
Original file line numberDiff line numberDiff line change
@@ -212,6 +212,179 @@ netpyne_geppetto.netParams.popParams['${this.props.name}']['spikePattern']['type
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}))
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}
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rhythmicLayout = () => {
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return <>
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<Box display='flex' alignItems='center' style={ { gap: '1rem' } }>
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<Typography style={ { color: experimentLabelColor, fontSize: '0.875rem', paddingLeft: '0.625rem', lineHeight: '130%', fontWeight: 400 } }>Start</Typography>
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<Grid container alignItems='center' spacing={1}>
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<Grid item xs={4}>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.rhythmic.start">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['interval']`} // TODO
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/>
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</NetPyNEField>
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</Grid>
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<Grid item xs={4}>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.rhythmic.startMax">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['interval']`} // TODO
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/>
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</NetPyNEField>
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</Grid>
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<Grid item xs={4}>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.rhythmic.startStd">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['startStd']`}
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/>
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</NetPyNEField>
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</Grid>
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</Grid>
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</Box>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.rhythmic.freq">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['freq']`}
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/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.rhythmic.freqStd">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['freq']`}
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/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.rhythmic.distribution">
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<NetPyNESelectField
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style={{mb: 0}}
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method="netpyne_geppetto.getAvailableStimulationDistribution"
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model={
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`netParams.popParams['${this.props.name}']['spikePattern']['distribution']`
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}
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postProcessItems={this.postProcessMenuItems}
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/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.rhythmic.eventsPerCycle">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['eventsPerCycle']`}
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/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.rhythmic.repeats">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['repeats']`}
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/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.rhythmic.stop">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['stop']`}
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/>
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</NetPyNEField>
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</>
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}
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evokedLayout = () => {
303+
return <>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.evoked.start">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['start']`}
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/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.evoked.inc">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['inc']`}
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/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.evoked.startStd">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['startStd']`}
323+
/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.evoked.numspikes">
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<NetPyNETextField
327+
fullWidth
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variant="filled"
329+
model={`netParams.popParams['${this.props.name}']['spikePattern']['numspikes']`}
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/>
331+
</NetPyNEField>
332+
</>
333+
}
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poissonLayout = () => {
336+
return <>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.poisson.start">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['start']`}
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/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.poisson.stop">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['stop']`}
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/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.poisson.frequency">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['frequency']`}
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/>
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</NetPyNEField>
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</>
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}
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361+
gaussLayout = () => {
362+
return <>
363+
<NetPyNEField mb={0} id="netParams.popParams.spikePattern.gauss.mu">
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<NetPyNETextField
365+
fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['mu']`}
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/>
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</NetPyNEField>
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<NetPyNEField mb={0} id="netParams.popParams.spikePattern.gauss.sigma">
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<NetPyNETextField
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fullWidth
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variant="filled"
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model={`netParams.popParams['${this.props.name}']['spikePattern']['sigma']`}
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/>
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</NetPyNEField>
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</>
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}
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380+
changeStimulationPatternLayout = (pattern) => {
381+
const patternKey = `${pattern}Layout`;
382+
if (!(patternKey in this)) {
383+
return <></>
384+
}
385+
return this[patternKey]()
386+
}
387+
215388
cellStimulationLayout = () => {
216389
if (!["VecStim", "NetStim"].includes(this.state.cellModel)) {
217390
return <></>
@@ -317,41 +490,9 @@ netpyne_geppetto.netParams.popParams['${this.props.name}']['spikePattern']['type
317490
/>
318491
</NetPyNEField>
319492

320-
<Box display='flex' alignItems='center' style={ { gap: '1rem' } }>
321-
<Typography style={ { color: experimentLabelColor, fontSize: '0.875rem', paddingLeft: '0.625rem', lineHeight: '130%', fontWeight: 400 } }>Start</Typography>
322-
<Grid container alignItems='center' spacing={1}>
323-
<Grid item xs={6}>
324-
<NetPyNEField mb={0} id="netParams.popParams.spikePattern.rhythmic.start">
325-
<NetPyNETextField
326-
fullWidth
327-
variant="filled"
328-
model={`netParams.popParams['${this.props.name}']['interval']`}
329-
/>
330-
</NetPyNEField>
331-
</Grid>
332-
<Grid item xs={3}>
333-
<TextField
334-
variant="filled"
335-
fullWidth
336-
onChange={this.handleRenameChange}
337-
value={this.state.currentName}
338-
disabled={this.renaming}
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label="End"
340-
/>
341-
</Grid>
342-
</Grid>
343-
</Box>
493+
{this.changeStimulationPatternLayout(this.state.patternType)}
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346-
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<TextField
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variant="filled"
349-
fullWidth
350-
onChange={this.handleRenameChange}
351-
value={this.state.currentName}
352-
disabled={this.renaming}
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label="Frequency (Hz)"
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/>
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</>
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}
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