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joa-quim · joa-quim · commit 4df0c5f6b711 · 2025-12-10T03:29:56.000Z
diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-937881ac
+b4b85027
diff --git a/documentation/common_opts/opt_B.html b/documentation/common_opts/opt_B.html
@@ -407,7 +407,7 @@
 
 <ul>
 <li><strong>B</strong> or <strong>axes</strong> or <strong>frame</strong><br>
-Set map boundary frame and axes attributes. Default is to draw and annotate left, bottom and vertical axes and just draw left and top axes. More at <a href="../../documentation/common_opts/opt_B.html">frame</a></li>
+Set map boundary frame and axes attributes. Default is to draw and annotate left, bottom and vertical axes and just draw left and top axes. More at <a href="../../documentation/common_opts/common_opts.html#frame">frame</a></li>
 </ul>
 
 
diff --git a/documentation/common_opts/opt_I.html b/documentation/common_opts/opt_I.html
@@ -407,7 +407,7 @@
 
 <ul>
 <li><strong>I</strong> or <strong>inc</strong> or <strong>increment</strong> or <strong>spacing</strong> : – <em>inc=x_inc</em> <strong>|</strong> <em>inc=(x_inc, y_inc)</em> <strong>|</strong> <em>inc=“xinc[+e|n][/yinc[+e|n]]”</em><br>
-Specify the grid increments or the block sizes. More at <a href="../../documentation/common_opts/opt_I.html">spacing</a></li>
+Specify the grid increments or the block sizes. More at <a href="../../documentation/common_opts/common_opts.html#inc">spacing</a></li>
 </ul>
 
 
diff --git a/documentation/common_opts/opt_J.html b/documentation/common_opts/opt_J.html
@@ -407,7 +407,7 @@
 
 <ul>
 <li><strong>J</strong> or <strong>proj</strong> or <strong>projection</strong> : – <em>proj=<parameters></parameters></em><br>
-Select map projection. More at <a href="../../documentation/common_opts/opt_J.html">proj</a></li>
+Select map projection. More at <a href="../../documentation/common_opts/common_opts.html#proj">proj</a></li>
 </ul>
 
 
diff --git a/documentation/common_opts/opt_R.html b/documentation/common_opts/opt_R.html
@@ -407,7 +407,7 @@
 
 <ul>
 <li><strong>R</strong> or <strong>region</strong> or <strong>limits</strong> : – <em>limits=(xmin, xmax, ymin, ymax)</em> <strong>|</strong> <em>limits=(BB=(xmin, xmax, ymin, ymax),)</em> <strong>|</strong> <em>limits=(LLUR=(xmin, xmax, ymin, ymax),units=“unit”)</em> <strong>|</strong> …more<br>
-Specify the region of interest. More at <a href="../../documentation/common_opts/opt_R.html">limits</a>. For perspective view <strong>view</strong>, optionally add <em>zmin,zmax</em>. This option may be used to indicate the range used for the 3-D axes. You may ask for a larger w/e/s/n region to have more room between the image and the axes.</li>
+Specify the region of interest. More at <a href="../../documentation/common_opts/common_opts.html#limits">limits</a>. For perspective view <strong>view</strong>, optionally add <em>zmin,zmax</em>. This option may be used to indicate the range used for the 3-D axes. You may ask for a larger w/e/s/n region to have more room between the image and the axes.</li>
 </ul>
 
 
diff --git a/documentation/common_opts/opt_R_3D.html b/documentation/common_opts/opt_R_3D.html
@@ -407,7 +407,7 @@
 
 <ul>
 <li><strong>R</strong> or <strong>region</strong> or <strong>limits</strong> : – <em>limits=(xmin, xmax, ymin, ymax, zmin, zmax)</em> <strong>|</strong> <em>limits=(BB=(xmin, xmax, ymin, ymax, zmin, zmax),)</em> <strong>|</strong> …more<br>
-Specify the region of interest. Default limits are computed from data extents. More at <a href="../../documentation/common_opts/opt_R.html">limits</a></li>
+Specify the region of interest. Default limits are computed from data extents. More at <a href="../../documentation/common_opts/common_opts.html#limits">limits</a></li>
 </ul>
 
 
diff --git a/documentation/common_opts/opt_U.html b/documentation/common_opts/opt_U.html
@@ -407,7 +407,7 @@
 
 <ul>
 <li><strong>U</strong> or <strong>time_stamp</strong> : – <em>time_stamp=true</em> <strong>|</strong> <em>time_stamp=(just=“code”, pos=(dx,dy), label=“label”, com=true)</em><br>
-Draw GMT time stamp logo on plot. More at <a href="../../documentation/common_opts/opt_U.html">timestamp</a></li>
+Draw GMT time stamp logo on plot. More at <a href="../../documentation/common_opts/common_opts.html#timestamp">timestamp</a></li>
 </ul>
 
 
diff --git a/documentation/common_opts/opt_V.html b/documentation/common_opts/opt_V.html
@@ -407,7 +407,7 @@
 
 <ul>
 <li><strong>V</strong> or <em>verbose</em> : – <em>verbose=true</em> <strong>|</strong> <em>verbose=level</em><br>
-Select verbosity level. More at <a href="../../documentation/common_opts/opt_V.html">verbose</a></li>
+Select verbosity level. More at <a href="../../documentation/common_opts/common_opts.html#verbose">verbose</a></li>
 </ul>
 
 
diff --git a/documentation/common_opts/opt_X.html b/documentation/common_opts/opt_X.html
@@ -407,7 +407,7 @@
 
 <ul>
 <li><strong>X</strong> or <strong>xshift</strong> or <strong>x_offset</strong> : <em>xshift=true</em> <strong>|</strong> <em>xshift=x-shift</em> <strong>|</strong> <em>xshift=(shift=x-shift, mov=“a|c|f|r”)</em><br>
-Shift plot origin. More at <a href="../../documentation/common_opts/opt_X.html">xshift</a></li>
+Shift plot origin. More at <a href="../../documentation/common_opts/common_opts.html#xshift">xshift</a></li>
 </ul>
 
 
diff --git a/documentation/common_opts/opt_Y.html b/documentation/common_opts/opt_Y.html
@@ -407,7 +407,7 @@
 
 <ul>
 <li><strong>Y</strong> or <strong>yshift</strong> or <strong>y_offset</strong> : <em>yshift=true</em> <strong>|</strong> <em>yshift=y-shift</em> <strong>|</strong> <em>yshift=(shift=y-shift, mov=“a|c|f|r”)</em><br>
-Shift plot origin. More at <a href="../../documentation/common_opts/opt_Y.html">yshift</a></li>
+Shift plot origin. More at <a href="../../documentation/common_opts/common_opts.html#yshift">yshift</a></li>
 </ul>
 
 
diff --git a/documentation/common_opts/opt_n.html b/documentation/common_opts/opt_n.html
@@ -407,7 +407,7 @@
 
 <ul>
 <li><strong>n</strong> or <strong>interp</strong> or <strong>interpol</strong> : – <em>interp=params</em><br>
-Select interpolation mode for grids. More at <a href="../../documentation/common_opts/opt_n.html">interp</a></li>
+Select interpolation mode for grids. More at <a href="../../documentation/common_opts/common_opts.html#interp">interp</a></li>
 </ul>
 
 
diff --git a/documentation/common_opts/opt_p.html b/documentation/common_opts/opt_p.html
@@ -415,7 +415,7 @@
 <li><em>view=(azim,elev)</em><br>
 A two elements tuple with azimuth and elevation</li>
 <li><em>view=true</em><br>
-To propagate the viewpoint used in a previous module (makes sense only in <code>bar3!</code>) More at <a href="../../documentation/common_opts/opt_p.html">perspective</a></li>
+To propagate the viewpoint used in a previous module (makes sense only in <code>bar3!</code>) More at <a href="../../documentation/common_opts/common_opts.html#perspective">perspective</a></li>
 </ul></li>
 </ul>
 
diff --git a/documentation/modules/basemap.html b/documentation/modules/basemap.html
@@ -476,16 +476,16 @@ <h1 class="title">basemap</h1>
 <p>Plot base maps and frames</p>
 <section id="description" class="level2">
 <h2 class="anchored" data-anchor-id="description">Description</h2>
-<p>Creates a basic or fancy basemap with axes, fill, and titles. Several map projections are available, and the user may specify separate tick-mark intervals for boundary annotation, ticking, and (optionally) gridlines. A simple map scale (<strong>map_scale</strong>) or directional rose (<strong>rose</strong>) may also be plotted. At least one of the options [frame], <strong>map_scale</strong>, or <strong>rose</strong> must be specified.</p>
+<p>Creates a basic or fancy basemap with axes, fill, and titles. Several map projections are available, and the user may specify separate tick-mark intervals for boundary annotation, ticking, and (optionally) gridlines. A simple map scale (<strong>map_scale</strong>) or directional rose (<strong>rose</strong>) may also be plotted. At least one of the options <a href="../../documentation/common_opts/common_opts.html#frame">frame</a>, <strong>map_scale</strong>, or <strong>rose</strong> must be specified.</p>
 <ul>
 <li><p><strong>J</strong> or <strong>proj</strong> or <strong>projection</strong> : – <em>proj=<parameters></parameters></em><br>
-Select map projection. More at <a href="../../documentation/common_opts/opt_J.html">proj</a></p></li>
+Select map projection. More at <a href="../../documentation/common_opts/common_opts.html#proj">proj</a></p></li>
 <li><p><strong>R</strong> or <strong>region</strong> or <strong>limits</strong> : – <em>limits=(xmin, xmax, ymin, ymax)</em> <strong>|</strong> <em>limits=(BB=(xmin, xmax, ymin, ymax),)</em> <strong>|</strong> <em>limits=(LLUR=(xmin, xmax, ymin, ymax),units=“unit”)</em> <strong>|</strong> …more<br>
-Specify the region of interest. More at <a href="../../documentation/common_opts/opt_R.html">limits</a>. For perspective view <strong>view</strong>, optionally add <em>zmin,zmax</em>. This option may be used to indicate the range used for the 3-D axes. You may ask for a larger w/e/s/n region to have more room between the image and the axes.</p></li>
+Specify the region of interest. More at <a href="../../documentation/common_opts/common_opts.html#limits">limits</a>. For perspective view <strong>view</strong>, optionally add <em>zmin,zmax</em>. This option may be used to indicate the range used for the 3-D axes. You may ask for a larger w/e/s/n region to have more room between the image and the axes.</p></li>
 <li><p><strong>A</strong> or <strong>polygon</strong> : <em>polygon=true</em> or <em>polygon=fname</em><br>
 No plotting is performed. Instead, we determine the geographical coordinates of the polygon outline for the (possibly oblique) rectangular map domain. The plot domain must be given via [limits] and [proj], with no other options allowed. The sampling interval is controlled via <code>MAP_LINE_STEP</code> parameter. The coordinates are return in a <a href="../..\documentation/general/types.html#sec-dataset-type">GMTdataset</a> or written to <em>fname</em> if a file name is specified.</p></li>
 <li><p><strong>B</strong> or <strong>axes</strong> or <strong>frame</strong><br>
-Set map boundary frame and axes attributes. Default is to draw and annotate left, bottom and vertical axes and just draw left and top axes. More at <a href="../../documentation/common_opts/opt_B.html">frame</a></p></li>
+Set map boundary frame and axes attributes. Default is to draw and annotate left, bottom and vertical axes and just draw left and top axes. More at <a href="../../documentation/common_opts/common_opts.html#frame">frame</a></p></li>
 <li><p><strong>F</strong> or <strong>box</strong> : – <em>box=(clearance=gap, pen=pen, fill=fill, inner=(gap,pen), rounded=xx, shaded=(dx,dy[,shade]))</em><br>
 Without further options, draws a rectangular border around the map scale or rose using <a href="http://docs.generic-mapping-tools.org/latest/gmt.conf.html#map-frame-pen">MAP_FRAME_PEN</a>; specify a different pen with <strong>pen=new_pen</strong>. Add <code>fill=fill_value</code> to fill the logo box [no fill]. Append <strong>clearance=gap</strong> where <strong>gap</strong> is either a scalar, or tuples with <em>(xgap, ygap)</em>, or <em>(lgap,rgap,bgap,tgap</em>) where these items are uniform, separate in x- and y-direction, or individual side spacings between logo and border. Append <code>inner</code> to draw a secondary, inner border as well. We use a uniform <strong>gap</strong> between borders of <strong>2p</strong> and the <a href="http://docs.generic-mapping-tools.org/latest/gmt.conf.html#map-default-pen">MAP_DEFAULT_PEN</a> unless other values are specified. Append <strong>rounded=6</strong> to draw rounded rectangular borders instead, with a <strong>6p</strong> corner radius. You can override this radius by appending another value. Finally, append <strong>shaded=(dx,dy[,shade])</strong> to draw an offset background shaded region. Here, <strong>dx,dy</strong> indicates the shift relative to the foreground frame [<strong>4p,4p</strong>] and <strong>shade</strong> sets the fill style to use for shading [gray50]. Requires <strong>map_scale</strong> or <strong>rose</strong>. If both <strong>map_scale</strong> or <strong>rose</strong>, you may repeat <strong>box</strong> after each of these but remember to put repeated settings inside a tuple of tuples.</p></li>
 <li><p><strong>L</strong> or <strong>map_scale</strong> : – <em>map_scale=([map=true, inside=true, norm=true, paper=true,] anchor=refpoint, scale_at_lat=lat, length=len [,align=side, justify=code, fancy=true, label=lab, offset=(dx,dy), units=unit, vertical=true])</em><br>
@@ -529,15 +529,27 @@ <h2 class="anchored" data-anchor-id="non-geographical-projections">Non-geographi
 <section id="linear-x-y-plot" class="level3">
 <h3 class="anchored" data-anchor-id="linear-x-y-plot">Linear x-y plot</h3>
 <p>To make a linear x/y frame with all axes, but with only left and bottom axes annotated, using xscale = yscale = 1 cm per unit, ticking every 1 unit and annotating every 2, and using xlabel = “Distance” and ylabel = “No of samples”, use</p>
-<div id="31794aec" class="cell" data-execution_count="1">
+<div id="1db40b26" class="cell" data-execution_count="1">
 <div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb2"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="im">using</span> <span class="bu">GMT</span></span>
 <span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a></span>
 <span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a><span class="fu">basemap</span>(region<span class="op">=</span>(<span class="fl">0</span>,<span class="fl">9</span>,<span class="fl">0</span>,<span class="fl">5</span>), figscale<span class="op">=</span><span class="fl">1</span>,</span>
 <span id="cb2-4"><a href="#cb2-4" aria-hidden="true" tabindex="-1"></a>        frame<span class="op">=</span>(axes<span class="op">=:</span>WeSn, annot<span class="op">=</span><span class="fl">2</span>, ticks<span class="op">=</span><span class="fl">1</span>, xlabel<span class="op">=:</span>Distance, ylabel<span class="op">=</span><span class="st">"No of samples"</span>), show<span class="op">=</span><span class="cn">true</span>)</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
+<div class="cell-output cell-output-stderr">
+<div class="ansi-escaped-output">
+<pre><span class="ansi-green-fg ansi-bold">Precompiling</span> packages...
+
+  51722.6 ms<span class="ansi-green-fg">  ✓ </span>GMT
+
+  1 dependency successfully precompiled in 53 seconds. 80 already precompiled.
+
+<span class="ansi-cyan-fg ansi-bold">[ </span><span class="ansi-cyan-fg ansi-bold">Info: </span>Precompiling GMTParkerFFTExt [35a23bc9-6f20-5cbc-8971-9cdf66427582]
+</pre>
+</div>
+</div>
 <div class="cell-output cell-output-display">
 <div>
 <figure class="figure">
-<p><img src="basemap_files/figure-html/cell-2-output-1.png" class="img-fluid figure-img"></p>
+<p><img src="basemap_files/figure-html/cell-2-output-2.png" class="img-fluid figure-img"></p>
 </figure>
 </div>
 </div>
@@ -546,7 +558,7 @@ <h3 class="anchored" data-anchor-id="linear-x-y-plot">Linear x-y plot</h3>
 <section id="log-log-plot" class="level3">
 <h3 class="anchored" data-anchor-id="log-log-plot">Log-log plot</h3>
 <p>To make a log-log frame with only the left and bottom axes, where the x-axis is 25 cm and annotated every 1-2-5 and the y-axis is 15 cm and annotated every power of 10 but has tick-marks every 0.1, run</p>
-<div id="d4ff655c" class="cell" data-execution_count="2">
+<div id="1f53a9c8" class="cell" data-execution_count="2">
 <div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb3"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="im">using</span> <span class="bu">GMT</span></span>
 <span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a></span>
 <span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a><span class="fu">basemap</span>(region<span class="op">=</span>(<span class="fl">1</span>,<span class="fl">10000</span>,<span class="fl">1e20</span>,<span class="fl">1e25</span>), figsize<span class="op">=</span>(<span class="fl">25</span>,<span class="fl">15</span>), proj<span class="op">=:</span>logxy, frame<span class="op">=</span>(axes<span class="op">=:</span>WS,),</span>
@@ -564,7 +576,7 @@ <h3 class="anchored" data-anchor-id="log-log-plot">Log-log plot</h3>
 <section id="power-axes" class="level3">
 <h3 class="anchored" data-anchor-id="power-axes">Power axes</h3>
 <p>To design an axis system to be used for a depth-sqrt(age) plot with depth positive down, ticked and annotated every 500m, and ages (in millions of years) annotated at 1 My, 4 My, 9 My etc., use</p>
-<div id="91b8a498" class="cell" data-execution_count="3">
+<div id="962cb166" class="cell" data-execution_count="3">
 <div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb4"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="im">using</span> <span class="bu">GMT</span></span>
 <span id="cb4-2"><a href="#cb4-2" aria-hidden="true" tabindex="-1"></a>    <span class="co"># This still fails to generate the intended GMT command. (maybe let scale="pow0.5")</span></span>
 <span id="cb4-3"><a href="#cb4-3" aria-hidden="true" tabindex="-1"></a>    <span class="co">#basemap(region=(0,100,0,5000), figscale=(1,-0.001), xaxis=(annot=1, label="Crustal age", scale=:pow), yaxis=(annot=500, label=:Depth), show=true)</span></span>
@@ -581,7 +593,7 @@ <h3 class="anchored" data-anchor-id="power-axes">Power axes</h3>
 <section id="polar-thetar-plot" class="level3">
 <h3 class="anchored" data-anchor-id="polar-thetar-plot">Polar (theta,r) plot</h3>
 <p>For a base map for use with polar coordinates, where the radius from 0 to 1000 should correspond to 5 cm and with gridlines and ticks intervals automatically determined, use</p>
-<div id="04c9e2be" class="cell" data-execution_count="4">
+<div id="151efd93" class="cell" data-execution_count="4">
 <div class="code-copy-outer-scaffold"><div class="sourceCode cell-code" id="cb5"><pre class="sourceCode julia code-with-copy"><code class="sourceCode julia"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="im">using</span> <span class="bu">GMT</span></span>
 <span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a><span class="fu">basemap</span>(region<span class="op">=</span>(<span class="fl">0</span>,<span class="fl">360</span>,<span class="fl">0</span>,<span class="fl">1000</span>), figsize<span class="op">=</span><span class="fl">10</span>, frame<span class="op">=:</span>afg, proj<span class="op">=:</span>polar, show<span class="op">=</span><span class="cn">true</span>)</span></code></pre></div><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></div>
 <div class="cell-output cell-output-display">
diff --git a/documentation/modules/basemap_files/figure-html/cell-2-output-2.png b/documentation/modules/basemap_files/figure-html/cell-2-output-2.png
diff --git a/search.json b/search.json
diff --git a/sitemap.xml b/sitemap.xml
