|
| 1 | +=============================================================== |
| 2 | + |
| 3 | +Tag name: cam6_4_084 |
| 4 | +Originator(s): fvitt |
| 5 | +Date: 8 Apr 2025 |
| 6 | +One-line Summary: Updates to nitrogen chemistry relevant to the thermosphere |
| 7 | +Github PR URL: https://github.com/ESCOMP/CAM/pull/1283 |
| 8 | + |
| 9 | +Purpose of changes (include the issue number and title text for each relevant GitHub issue): |
| 10 | + |
| 11 | + Updates to nitrogen chemistry, as described in issue #1155. |
| 12 | + |
| 13 | +Describe any changes made to build system: N/A |
| 14 | + |
| 15 | +Describe any changes made to the namelist: N/A |
| 16 | + |
| 17 | +List any changes to the defaults for the boundary datasets: N/A |
| 18 | + |
| 19 | +Describe any substantial timing or memory changes: N/A |
| 20 | + |
| 21 | +Code reviewed by: cacraigucar |
| 22 | + |
| 23 | +List all files eliminated: N/A |
| 24 | + |
| 25 | +List all files added and what they do: N/A |
| 26 | + |
| 27 | +List all existing files that have been modified, and describe the changes: |
| 28 | + |
| 29 | +M bld/configure |
| 30 | + - include age-of-air tracers in CAM-Chem as well as WACCM default configurations |
| 31 | + |
| 32 | +M bld/namelist_files/namelist_defaults_cam.xml |
| 33 | + - spun up ne16 and ne30 ICs for WACCMX6 |
| 34 | + - update default ne16pg3 topo file |
| 35 | + - update se namelist opts for WACCM(x)6 |
| 36 | + |
| 37 | +M bld/namelist_files/use_cases/sd_waccm_ma_cam6.xml |
| 38 | + - use updated filenames list |
| 39 | + |
| 40 | +M bld/namelist_files/use_cases/waccm_ma_hist_cam7.xml |
| 41 | +M bld/namelist_files/use_cases/waccm_sc_hist_cam7.xml |
| 42 | + - use updated default ne16pg3 topo file |
| 43 | + |
| 44 | +M cime_config/config_component.xml |
| 45 | + - age-of-air defaults handled in bld/configure |
| 46 | + |
| 47 | +M src/chemistry/mozart/mo_usrrxt.F90 |
| 48 | + - add customized rate calculations (appropriate for the thermosphere) |
| 49 | + for reactions: |
| 50 | + N + O2 -> NO + O |
| 51 | + N2D + O2 -> NO + O |
| 52 | + N2D + e -> N + e |
| 53 | + |
| 54 | +M src/chemistry/pp_waccm_ma_mam5/chem_mech.doc |
| 55 | +M src/chemistry/pp_waccm_ma_mam5/chem_mech.in |
| 56 | +M src/chemistry/pp_waccm_ma_mam5/chem_mods.F90 |
| 57 | +M src/chemistry/pp_waccm_ma_mam5/m_rxt_id.F90 |
| 58 | +M src/chemistry/pp_waccm_ma_mam5/mo_adjrxt.F90 |
| 59 | +M src/chemistry/pp_waccm_ma_mam5/mo_indprd.F90 |
| 60 | +M src/chemistry/pp_waccm_ma_mam5/mo_lin_matrix.F90 |
| 61 | +M src/chemistry/pp_waccm_ma_mam5/mo_lu_factor.F90 |
| 62 | +M src/chemistry/pp_waccm_ma_mam5/mo_nln_matrix.F90 |
| 63 | +M src/chemistry/pp_waccm_ma_mam5/mo_prod_loss.F90 |
| 64 | +M src/chemistry/pp_waccm_ma_mam5/mo_rxt_rates_conv.F90 |
| 65 | +M src/chemistry/pp_waccm_ma_mam5/mo_setrxt.F90 |
| 66 | +M src/chemistry/pp_waccm_ma_mam5/mo_sim_dat.F90 |
| 67 | +M src/chemistry/pp_waccm_mad_mam5/chem_mech.doc |
| 68 | +M src/chemistry/pp_waccm_mad_mam5/chem_mech.in |
| 69 | +M src/chemistry/pp_waccm_mad_mam5/chem_mods.F90 |
| 70 | +M src/chemistry/pp_waccm_mad_mam5/m_rxt_id.F90 |
| 71 | +M src/chemistry/pp_waccm_mad_mam5/mo_adjrxt.F90 |
| 72 | +M src/chemistry/pp_waccm_mad_mam5/mo_indprd.F90 |
| 73 | +M src/chemistry/pp_waccm_mad_mam5/mo_lin_matrix.F90 |
| 74 | +M src/chemistry/pp_waccm_mad_mam5/mo_lu_factor.F90 |
| 75 | +M src/chemistry/pp_waccm_mad_mam5/mo_lu_solve.F90 |
| 76 | +M src/chemistry/pp_waccm_mad_mam5/mo_nln_matrix.F90 |
| 77 | +M src/chemistry/pp_waccm_mad_mam5/mo_prod_loss.F90 |
| 78 | +M src/chemistry/pp_waccm_mad_mam5/mo_rxt_rates_conv.F90 |
| 79 | +M src/chemistry/pp_waccm_mad_mam5/mo_setrxt.F90 |
| 80 | +M src/chemistry/pp_waccm_mad_mam5/mo_sim_dat.F90 |
| 81 | +M src/chemistry/pp_waccm_t4ma_mam5/chem_mech.doc |
| 82 | +M src/chemistry/pp_waccm_t4ma_mam5/chem_mech.in |
| 83 | +M src/chemistry/pp_waccm_t4ma_mam5/chem_mods.F90 |
| 84 | +M src/chemistry/pp_waccm_t4ma_mam5/m_rxt_id.F90 |
| 85 | +M src/chemistry/pp_waccm_t4ma_mam5/mo_adjrxt.F90 |
| 86 | +M src/chemistry/pp_waccm_t4ma_mam5/mo_indprd.F90 |
| 87 | +M src/chemistry/pp_waccm_t4ma_mam5/mo_lin_matrix.F90 |
| 88 | +M src/chemistry/pp_waccm_t4ma_mam5/mo_lu_factor.F90 |
| 89 | +M src/chemistry/pp_waccm_t4ma_mam5/mo_nln_matrix.F90 |
| 90 | +M src/chemistry/pp_waccm_t4ma_mam5/mo_prod_loss.F90 |
| 91 | +M src/chemistry/pp_waccm_t4ma_mam5/mo_rxt_rates_conv.F90 |
| 92 | +M src/chemistry/pp_waccm_t4ma_mam5/mo_setrxt.F90 |
| 93 | +M src/chemistry/pp_waccm_t4ma_mam5/mo_sim_dat.F90 |
| 94 | +M src/chemistry/pp_waccm_tsmlt_mam5/chem_mech.doc |
| 95 | +M src/chemistry/pp_waccm_tsmlt_mam5/chem_mech.in |
| 96 | +M src/chemistry/pp_waccm_tsmlt_mam5/chem_mods.F90 |
| 97 | +M src/chemistry/pp_waccm_tsmlt_mam5/m_rxt_id.F90 |
| 98 | +M src/chemistry/pp_waccm_tsmlt_mam5/mo_adjrxt.F90 |
| 99 | +M src/chemistry/pp_waccm_tsmlt_mam5/mo_indprd.F90 |
| 100 | +M src/chemistry/pp_waccm_tsmlt_mam5/mo_lin_matrix.F90 |
| 101 | +M src/chemistry/pp_waccm_tsmlt_mam5/mo_lu_factor.F90 |
| 102 | +M src/chemistry/pp_waccm_tsmlt_mam5/mo_lu_solve.F90 |
| 103 | +M src/chemistry/pp_waccm_tsmlt_mam5/mo_nln_matrix.F90 |
| 104 | +M src/chemistry/pp_waccm_tsmlt_mam5/mo_prod_loss.F90 |
| 105 | +M src/chemistry/pp_waccm_tsmlt_mam5/mo_rxt_rates_conv.F90 |
| 106 | +M src/chemistry/pp_waccm_tsmlt_mam5/mo_setrxt.F90 |
| 107 | +M src/chemistry/pp_waccm_tsmlt_mam5/mo_sim_dat.F90 |
| 108 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/chem_mech.doc |
| 109 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/chem_mech.in |
| 110 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/chem_mods.F90 |
| 111 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/m_rxt_id.F90 |
| 112 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/m_spc_id.F90 |
| 113 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/mo_adjrxt.F90 |
| 114 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/mo_indprd.F90 |
| 115 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/mo_lin_matrix.F90 |
| 116 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/mo_lu_factor.F90 |
| 117 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/mo_lu_solve.F90 |
| 118 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/mo_nln_matrix.F90 |
| 119 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/mo_prod_loss.F90 |
| 120 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/mo_rxt_rates_conv.F90 |
| 121 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/mo_setrxt.F90 |
| 122 | +M src/chemistry/pp_waccm_tsmlt_mam5_vbsext/mo_sim_dat.F90 |
| 123 | + - updates to nitrogen chemistry for thermosphere |
1 | 124 |
|
| 125 | +If there were any failures reported from running test_driver.sh on any test |
| 126 | +platform, and checkin with these failures has been OK'd by the gatekeeper, |
| 127 | +then copy the lines from the td.*.status files for the failed tests to the |
| 128 | +appropriate machine below. All failed tests must be justified. |
| 129 | + |
| 130 | +derecho/intel/aux_cam: |
| 131 | + DIFF SMS_Ld1.f09_f09_mg17.FCHIST_GC.derecho_intel.cam-outfrq1d |
| 132 | + DIFF SMS_Lh12.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq3h |
| 133 | + FAIL ERP_Ln9.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq9s |
| 134 | + - pre-existing failures due to HEMCO not having reproducible results (issues #1018 and #856) |
| 135 | + |
| 136 | + FAIL SMS_D_Ln9_P1280x1.ne0CONUSne30x8_ne0CONUSne30x8_mt12.FCHIST.derecho_intel.cam-outfrq9s |
| 137 | + - pre-existing failures due to build-namelist error requiring CLM/CTSM external update |
| 138 | + |
| 139 | + DIFF SMS_D_Ln9_P1280x1.ne30pg3_ne30pg3_mt232.FHISTC_MTt1s.derecho_intel.cam-outfrq9s_Leung_dust |
| 140 | + - differences are in age-of-air tracers, otherwise bit-for-bit |
| 141 | + |
| 142 | + DIFF ERS_Ln9.f09_f09_mg17.FX2000.derecho_intel.cam-outfrq9s |
| 143 | + DIFF ERS_Ln9.f19_f19_mg17.FXSD.derecho_intel.cam-outfrq9s |
| 144 | + DIFF SMS_D_Ln9.f19_f19_mg17.FWma2000climo.derecho_intel.cam-outfrq9s |
| 145 | + DIFF SMS_Ld1.f09_f09_mg17.FW2000climo.derecho_intel.cam-outfrq1d |
| 146 | + DIFF SMS_Ln9.f09_f09_mg17.FW1850.derecho_intel.cam-reduced_hist3s |
| 147 | + - expected changes due to waccm chemistry updates |
| 148 | + |
| 149 | + DIFF ERP_Ld3.ne16pg3_ne16pg3_mg17.FHISTC_WAt1ma.derecho_intel.cam-reduced_hist1d |
| 150 | + DIFF ERP_Ln9.ne30pg3_ne30pg3_mg17.FHISTC_WAma.derecho_intel.cam-outfrq9s |
| 151 | + DIFF SMS_C2_D_Ln9.ne16pg3_ne16pg3_mg17.FHISTC_WXma.derecho_intel.cam-outfrq9s |
| 152 | + DIFF SMS_D_Ln9.ne16_ne16_mg17.QPX2000.derecho_intel.cam-outfrq9s_amie |
| 153 | + DIFF SMS_Ln9.ne30pg3_ne30pg3_mg17.FW2000climo.derecho_intel.cam-outfrq9s_rrtmgp |
| 154 | + DIFF ERS_Ln9.ne30pg3_ne30pg3_mg17.FHISTC_WXma.derecho_intel.cam-outfrq9s |
| 155 | + - expected changes due to waccm chemistry updates |
| 156 | + and changes in se_ namelist setteings |
| 157 | + |
| 158 | +derecho/nvhpc/aux_cam: |
| 159 | + FAIL ERS_Ln9.ne30pg3_ne30pg3_mg17.F2000dev.derecho_nvhpc.cam-outfrq9s_gpu_default |
| 160 | + - machine issue |
| 161 | + |
| 162 | +izumi/nag/aux_cam: |
| 163 | + DIFF ERC_D_Ln9.f10_f10_mg37.QPWmaC6.izumi_nag.cam-outfrq3s |
| 164 | + - expected changes due to waccm chemistry updates |
| 165 | + |
| 166 | + DIFF SMS_D_Ln3.ne5pg3_ne5pg3_mg37.QPX2000.izumi_nag.cam-outfrq3s |
| 167 | + - expected changes due to waccm chemistry updates |
| 168 | + and changes in se_ namelist setteings |
| 169 | + |
| 170 | + DIFF SMS_D_Ln6.ne5_ne5_mg37.QPWmaC4.izumi_nag.cam-outfrq3s_physgrid_tem |
| 171 | + - expected differences due to changes in se_ namelist setteings |
| 172 | + |
| 173 | +izumi/gnu/aux_cam: |
| 174 | + DIFF ERC_D_Ln9.f10_f10_mg37.QPC4.izumi_gnu.cam-outfrq3s_diags |
| 175 | + - differences are in age-of-air tracers, otherwise bit-for-bit |
| 176 | + |
| 177 | + DIFF ERP_Ln9_P24x2.f45_f45_mg37.QPWmaC6.izumi_gnu.cam-outfrq9s_mee_fluxes |
| 178 | + - expected changes due to waccm chemistry updates |
| 179 | + |
| 180 | +CAM tag used for the baseline comparison tests if different than previous |
| 181 | +tag: |
| 182 | + cam6_4_082 for derecho tests |
| 183 | + |
| 184 | +Summarize any changes to answers: |
| 185 | + larger than roundoff for WACCM configurations |
| 186 | + |
| 187 | +=============================================================== |
2 | 188 | =============================================================== |
3 | 189 |
|
4 | 190 | Tag name: cam6_4_083 |
|
0 commit comments