Populate with data files for 2.5 EMOD release.

Author: clorton

.gitattributes

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+# Auto detect text files and perform LF normalization
+* text=auto
+
+# Custom for Visual Studio
+*.cs     diff=csharp
+
+# Standard to msysgit
+*.doc	 diff=astextplain
+*.DOC	 diff=astextplain
+*.docx diff=astextplain
+*.DOCX diff=astextplain
+*.dot  diff=astextplain
+*.DOT  diff=astextplain
+*.pdf  diff=astextplain
+*.PDF	 diff=astextplain
+*.rtf	 diff=astextplain
+*.RTF	 diff=astextplain
+*.bin filter=lfs diff=lfs merge=lfs -text
+*.flt filter=lfs diff=lfs merge=lfs -text
+India/India_2_5arcmin_demographics.json filter=lfs diff=lfs merge=lfs -text

.gitignore

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+## Ignore Visual Studio temporary files, build results, and
+## files generated by popular Visual Studio add-ons.
+
+# User-specific files
+*.suo
+*.user
+*.userosscache
+*.sln.docstates
+
+# Build results
+[Dd]ebug/
+[Dd]ebugPublic/
+[Rr]elease/
+[Rr]eleases/
+x64/
+x86/
+build/
+bld/
+[Bb]in/
+[Oo]bj/
+
+# Roslyn cache directories
+*.ide/
+
+# MSTest test Results
+[Tt]est[Rr]esult*/
+[Bb]uild[Ll]og.*
+
+#NUNIT
+*.VisualState.xml
+TestResult.xml
+
+# Build Results of an ATL Project
+[Dd]ebugPS/
+[Rr]eleasePS/
+dlldata.c
+
+*_i.c
+*_p.c
+*_i.h
+*.ilk
+*.meta
+*.obj
+*.pch
+*.pdb
+*.pgc
+*.pgd
+*.rsp
+*.sbr
+*.tlb
+*.tli
+#*.tlh # We, IDM want these.
+*.tmp
+*.tmp_proj
+*.log
+*.vspscc
+*.vssscc
+.builds
+*.pidb
+*.svclog
+*.scc
+
+# Chutzpah Test files
+_Chutzpah*
+
+# Visual C++ cache files
+ipch/
+*.aps
+*.ncb
+*.opensdf
+*.sdf
+*.cachefile
+
+# Visual Studio profiler
+*.psess
+*.vsp
+*.vspx
+
+# TFS 2012 Local Workspace
+$tf/
+
+# Guidance Automation Toolkit
+*.gpState
+
+# ReSharper is a .NET coding add-in
+_ReSharper*/
+*.[Rr]e[Ss]harper
+*.DotSettings.user
+
+# JustCode is a .NET coding addin-in
+.JustCode
+
+# TeamCity is a build add-in
+_TeamCity*
+
+# DotCover is a Code Coverage Tool
+*.dotCover
+
+# NCrunch
+_NCrunch_*
+.*crunch*.local.xml
+
+# MightyMoose
+*.mm.*
+AutoTest.Net/
+
+# Web workbench (sass)
+.sass-cache/
+
+# Installshield output folder
+[Ee]xpress/
+
+# DocProject is a documentation generator add-in
+DocProject/buildhelp/
+DocProject/Help/*.HxT
+DocProject/Help/*.HxC
+DocProject/Help/*.hhc
+DocProject/Help/*.hhk
+DocProject/Help/*.hhp
+DocProject/Help/Html2
+DocProject/Help/html
+
+# Click-Once directory
+publish/
+
+# Publish Web Output
+*.[Pp]ublish.xml
+*.azurePubxml
+# TODO: Comment the next line if you want to checkin your web deploy settings 
+# but database connection strings (with potential passwords) will be unencrypted
+*.pubxml
+*.publishproj
+
+# NuGet Packages
+*.nupkg
+# The packages folder can be ignored because of Package Restore
+**/packages/*
+# except build/, which is used as an MSBuild target.
+!**/packages/build/
+# If using the old MSBuild-Integrated Package Restore, uncomment this:
+#!**/packages/repositories.config
+
+# Windows Azure Build Output
+csx/
+*.build.csdef
+
+# Windows Store app package directory
+AppPackages/
+
+# Others
+sql/
+*.Cache
+ClientBin/
+[Ss]tyle[Cc]op.*
+~$*
+*~
+*.dbmdl
+*.dbproj.schemaview
+*.pfx
+*.publishsettings
+node_modules/
+
+# RIA/Silverlight projects
+Generated_Code/
+
+# Backup & report files from converting an old project file
+# to a newer Visual Studio version. Backup files are not needed,
+# because we have git ;-)
+_UpgradeReport_Files/
+Backup*/
+UpgradeLog*.XML
+UpgradeLog*.htm
+
+# SQL Server files
+*.mdf
+*.ldf
+
+# Business Intelligence projects
+*.rdl.data
+*.bim.layout
+*.bim_*.settings
+
+# Microsoft Fakes
+FakesAssemblies/
+
+# =========================
+# Operating System Files
+# =========================
+
+# OSX
+# =========================
+
+.DS_Store
+.AppleDouble
+.LSOverride
+
+# Thumbnails
+._*
+
+# Files that might appear on external disk
+.Spotlight-V100
+.Trashes
+
+# Directories potentially created on remote AFP share
+.AppleDB
+.AppleDesktop
+Network Trash Folder
+Temporary Items
+.apdisk
+
+# Windows
+# =========================
+
+# Windows image file caches
+Thumbs.db
+ehthumbs.db
+
+# Folder config file
+Desktop.ini
+
+# Recycle Bin used on file shares
+$RECYCLE.BIN/
+
+# Windows Installer files
+*.cab
+*.msi
+*.msm
+*.msp
+
+# Windows shortcuts
+*.lnk
+
+# Subversion
+.svn/
+
+# Mercurial
+.hg/
+.hgignore
+
+# Simulation output
+time.txt
+status.txt
+Transitions.json
+
+/Regression/reports/

Bihar-Like_1_Node/Bihar_single_node_demographics.compiled.json

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+{"Metadata":{"DateCreated":"Sun Sep 25 20:13:53 2011","Tool":"convertdemog.py","Author":"ewenger","IdReference":"Legacy","NodeCount":1},"StringTable":{"NodeID":"aa","NodeAttributes":"ab","Latitude":"ac","Longitude":"ad","Altitude":"ae","Airport":"af","Region":"ag","Seaport":"ah","InitialPopulation":"ai","BirthRate":"aj","Urban":"ak","AbovePoverty":"al","IndividualAttributes":"am","AgeDistributionFlag":"an","AgeDistribution1":"ao","AgeDistribution2":"ap","PrevalenceDistributionFlag":"aq","PrevalenceDistribution1":"ar","PrevalenceDistribution2":"as","ImmunityDistributionFlag":"at","ImmunityDistribution1":"au","ImmunityDistribution2":"av","RiskDistributionFlag":"aw","RiskDistribution1":"ax","RiskDistribution2":"ay","MigrationHeterogeneityDistributionFlag":"az","MigrationHeterogeneityDistribution1":"ba","MigrationHeterogeneityDistribution2":"bb","AgeDistribution":"bc","NumDistributionAxes":"bd","ResultUnits":"be","ResultScaleFactor":"bf","ResultValues":"bg","DistributionValues":"bh","FertilityDistribution":"bi","AxisNames":"bj","AxisUnits":"bk","AxisScaleFactors":"bl","NumPopulationGroups":"bm","PopulationGroups":"bn","MortalityDistribution":"bo","tOPV_dose_distribution":"bp","bOPV_dose_distribution":"bq","mOPV1_dose_distribution":"br","mOPV2_dose_distribution":"bs","mOPV3_dose_distribution":"bt","IPV_dose_distribution":"bu","mucosal_memory_distribution1":"bv","mucosal_memory_distribution2":"bw","mucosal_memory_distribution3":"bx","humoral_memory_distribution1":"by","humoral_memory_distribution2":"bz","humoral_memory_distribution3":"ca","maternal_antibody_distribution1":"cb","maternal_antibody_distribution2":"cc","maternal_antibody_distribution3":"cd","age_last_infection_distribution":"ce","age_last_IPV_distribution":"cf"},"Defaults":{"bp":{"bd":1,"bj":["age"],"bk":["years"],"bl":[365],"bm":[2],"bn":[[0,5]],"be":"vaccine 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