For comparing gene models across different annotations of the same genome.
pip install gmcomp
gmcomp annotation_file1.gff annotation_file2.gff annotation_file3.gff
Currently accepts gff/gtf files. The program will export a table of shared gene models across annotations, graphs for number of gene/transcript matches with a positional start/end offset from 0-5000, and graphs for fraction of gene/transcript overlaps from one annotation to another.
numpy, pandas, matplotlib and seaborn
On four sets of genome annotations on the Arabidopsis thaliana genome.
Gene offsets:
Shared feature counts:
Gene overlaps:
