Fixed Doxygen generation

Author: Kalashnikovni

CMakeLists.txt

@@ -81,10 +81,25 @@ install(
   COMPONENT sbgraph
 )
 
+# Documentation
+set(DOC_PATHS "${CMAKE_CURRENT_SOURCE_DIR}")
+string(REPLACE ";" " " DOXYGEN_INPUT_DIR "${DOC_PATHS}")
+
+set(DOXYGEN_OUTPUT_DIR "${CMAKE_CURRENT_SOURCE_DIR}/doc")
+
+set(DOXYGEN_EXCLUDE_DIR "${CMAKE_CURRENT_SOURCE_DIR}")
+
+set(DOXYGEN_MAINPAGE_DIR "${CMAKE_CURRENT_SOURCE_DIR}")
+
+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile.in
+               ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile @ONLY)
+
 add_custom_target(doc
   COMMAND echo "Generating Project documentation."
+  COMMAND doxygen "${CMAKE_CURRENT_BINARY_DIR}/Doxyfile"
+  #COMMAND ${CMAKE_COMMAND} -E make_directory ${PROJECT_SOURCE_DIR}/doc
+  WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
+  COMMENT "Generating API documentation with Doxygen"
 )
 
-add_dependencies(doc eval-doc sbg-doc util-doc)
-
 set_target_properties(doc PROPERTIES EXCLUDE_FROM_ALL ON)

eval/EVAL.doxyfile Doxyfile.ineval/EVAL.doxyfile renamed to Doxyfile.in

@@ -68,7 +68,7 @@ PROJECT_LOGO           =
 # entered, it will be relative to the location where doxygen was started. If
 # left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       = ../doc/eval
+OUTPUT_DIRECTORY       = @DOXYGEN_OUTPUT_DIR@
 
 # If the CREATE_SUBDIRS tag is set to YES then doxygen will create up to 4096
 # sub-directories (in 2 levels) under the output directory of each output format
@@ -162,7 +162,7 @@ INLINE_INHERITED_MEMB  = NO
 # shortest path that makes the file name unique will be used
 # The default value is: YES.
 
-FULL_PATH_NAMES        = YES
+FULL_PATH_NAMES        = NO
 
 # The STRIP_FROM_PATH tag can be used to strip a user-defined part of the path.
 # Stripping is only done if one of the specified strings matches the left-hand
@@ -174,7 +174,7 @@ FULL_PATH_NAMES        = YES
 # will be relative from the directory where doxygen is started.
 # This tag requires that the tag FULL_PATH_NAMES is set to YES.
 
-STRIP_FROM_PATH        =
+STRIP_FROM_PATH        = YES
 
 # The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of the
 # path mentioned in the documentation of a class, which tells the reader which
@@ -933,7 +933,7 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = eval
+INPUT                  = @DOXYGEN_INPUT_DIR@
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -973,13 +973,13 @@ INPUT_FILE_ENCODING    =
 # provided as doxygen C comment), *.py, *.pyw, *.f90, *.f95, *.f03, *.f08,
 # *.f18, *.f, *.for, *.vhd, *.vhdl, *.ucf, *.qsf and *.ice.
 
-FILE_PATTERNS          =
+FILE_PATTERNS          = *.cpp *.hpp *.md
 
 # The RECURSIVE tag can be used to specify whether or not subdirectories should
 # be searched for input files as well.
 # The default value is: NO.
 
-RECURSIVE              = NO
+RECURSIVE              = YES
 
 # The EXCLUDE tag can be used to specify files and/or directories that should be
 # excluded from the INPUT source files. This way you can easily exclude a
@@ -988,7 +988,13 @@ RECURSIVE              = NO
 # Note that relative paths are relative to the directory from which doxygen is
 # run.
 
-EXCLUDE                =
+EXCLUDE                = @DOXYGEN_EXCLUDE_DIR@/3rd-party \
+                         @DOXYGEN_EXCLUDE_DIR@/autom4te.cache \
+                         @DOXYGEN_EXCLUDE_DIR@/build \
+                         @DOXYGEN_EXCLUDE_DIR@/deploy \
+                         @DOXYGEN_EXCLUDE_DIR@/install \
+                         @DOXYGEN_EXCLUDE_DIR@/lib \
+                         @DOXYGEN_EXCLUDE_DIR@/obj
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded
@@ -1004,7 +1010,9 @@ EXCLUDE_SYMLINKS       = NO
 # Note that the wildcards are matched against the file with absolute path, so to
 # exclude all test directories for example use the pattern */test/*
 
-EXCLUDE_PATTERNS       =
+EXCLUDE_PATTERNS       = */build/* \
+                         */cmake/* \
+                         */.git/*
 
 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
 # (namespaces, classes, functions, etc.) that should be excluded from the
@@ -1099,7 +1107,7 @@ FILTER_SOURCE_PATTERNS =
 # (index.html). This can be useful if you have a project on for instance GitHub
 # and want to reuse the introduction page also for the doxygen output.
 
-USE_MDFILE_AS_MAINPAGE =
+USE_MDFILE_AS_MAINPAGE = @DOXYGEN_MAINPAGE_DIR@/README.md
 
 # The Fortran standard specifies that for fixed formatted Fortran code all
 # characters from position 72 are to be considered as comment. A common
@@ -1134,7 +1142,7 @@ INLINE_SOURCES         = NO
 # Fortran comments will always remain visible.
 # The default value is: YES.
 
-STRIP_CODE_COMMENTS    = YES
+STRIP_CODE_COMMENTS    = NO
 
 # If the REFERENCED_BY_RELATION tag is set to YES then for each documented
 # entity all documented functions referencing it will be listed.