tool descr update

warrenlr · warrenlr · commit a58c2f047b5e · 2026-03-25T07:36:10.000-07:00
diff --git a/_includes/software-content.html b/_includes/software-content.html
diff --git a/softwareblurbs/aiedit.txt b/softwareblurbs/aiedit.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/AIEdit
 
 
 
-Machine learning-based alignment-free genome polisher
+Machine learning-based genome polisher
 Genome Assembly
diff --git a/softwareblurbs/gappredict.txt b/softwareblurbs/gappredict.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/GapPredict
 
 
 
-LSTM character-level language model for genome gap filling
+LSTM model for genome gap filling
 Genome Assembly
diff --git a/softwareblurbs/goldpolish.txt b/softwareblurbs/goldpolish.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/goldpolish
 
 
 
-Genome sequence polisher with long sequencing reads
+Genome sequence polisher w/long reads
 Genome Assembly
diff --git a/softwareblurbs/goldrush.txt b/softwareblurbs/goldrush.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/goldrush
 
 conda install -c bioconda goldrush
 docker run quay.io/biocontainers/goldrush
-Linear time complexity de novo long read genome assembler 
+Linear time complexity long read genome assembler 
 Genome Assembly
diff --git a/softwareblurbs/konnector.txt b/softwareblurbs/konnector.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/abyss
 brew install abyss
 conda install -c bioconda abyss
 docker run bcgsc/abyss
-Connecting paired-end reads using a bloom filter de Bruijn graph
+Connecting paired-end reads w/Bloom filter graphs
 Genome Assembly
diff --git a/softwareblurbs/longstitch.txt b/softwareblurbs/longstitch.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/longstitch
 
 conda install -c bioconda longstitch
 docker run quay.io/biocontainers/longstitch
-Genome assembly correction+scaffolding with long reads
+Assembly correction+scaffolding w/long reads
 Genome Assembly
diff --git a/softwareblurbs/mtgrasp.txt b/softwareblurbs/mtgrasp.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/mtgrasp
 
 conda install -c bioconda mtgrasp
 docker run quay.io/biocontainers/mtgrasp
-Mitochondrial genome assembly and standardization pipeline
+Mitochondrial genome assembly + standardization
 Genome Assembly
diff --git a/softwareblurbs/ntedit-sealer.txt b/softwareblurbs/ntedit-sealer.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/ntedit_sealer_protocol
 brew install brewsci/bio/nthits ntedit abyss
 conda install -c bioconda nthits ntedit abyss
 
-Targeted error resolution, automated genome finishing
+Targeted polishing + automated genome finishing
 Genome Assembly
diff --git a/softwareblurbs/ntlink.txt b/softwareblurbs/ntlink.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/ntLink
 brew install brewsci/bio/ntlink
 conda install -c bioconda ntlink
 docker run quay.io/biocontainers/ntlink
-Genome assembly scaffolding using long reads and minimizers
+Long read genome assembly scaffolding w/minimizers
 Genome Assembly
diff --git a/softwareblurbs/pavfinder.txt b/softwareblurbs/pavfinder.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/pavfinder
 
 conda install -c bioconda pavfinder
 docker run quay.io/biocontainers/pavfinder
-Structural variants identification in genome assemblies
+Structural variants identification
 Genome Analysis
diff --git a/softwareblurbs/physlr.txt b/softwareblurbs/physlr.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/physlr
 
 conda install -c bioconda physlr
 docker run quay.io/biocontainers/physlr
-Chromosome-scale scaffolding by linked read physical map
+Scaffolding w/linked read physical map
 Genome Assembly
diff --git a/softwareblurbs/rails.txt b/softwareblurbs/rails.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/RAILS
 brew install brewsci/bio/rails
 
 
-Gap-filling (cobbler) and scaffolding (RAILS) with long reads
+Gap-filling + scaffolding w/long reads
 Genome Assembly
diff --git a/softwareblurbs/rnascoop.txt b/softwareblurbs/rnascoop.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/RNA-Scoop
 
 
 
-Isoform visualization tool for single-cell transcriptomes
+Single-cell transcriptomes isoform visualization
 Transcriptome Assembly
diff --git a/softwareblurbs/sealer.txt b/softwareblurbs/sealer.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/abyss
 brew install abyss
 conda install -c bioconda abyss
 docker run quay.io/biocontainers/abyss
-scalable gap-closing application for finishing draft genomes
+Gap-closing for finishing draft genomes
 Genome Assembly
diff --git a/softwareblurbs/ssake.txt b/softwareblurbs/ssake.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/SSAKE
 
 conda install -c bioconda ssake
 docker run quay.io/biocontainers/ssake
-De novo Genome Assembler with Short Sequence Reads
+Short read genome assembler
 Genome Assembly
diff --git a/softwareblurbs/tigmint.txt b/softwareblurbs/tigmint.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/tigmint
 brew install brewsci/bio/tigmint
 conda install -c bioconda tigmint
 docker run quay.io/biocontainers/tigmint
-Misassembly correction utility with long or linked reads
+Misassembly correction w/long or linked reads
 Genome Assembly
diff --git a/softwareblurbs/unikseq.txt b/softwareblurbs/unikseq.txt
@@ -4,5 +4,5 @@ https://github.com/birollab/unikseq
 
 conda install -c bioconda unikseq
 docker run quay.io/biocontainers/unikseq
-Unique region identification in DNA sequences, using k-mers
+Unique region identification in DNA sequences
 Genome Analysis

Original file line number	Diff line number	Diff line change
`@@ -4,5 +4,5 @@ https://github.com/birollab/AIEdit`
`4`	`4`
`5`	`5`
`6`	`6`
`7`		`-Machine learning-based alignment-free genome polisher`
	`7`	`+Machine learning-based genome polisher`
`8`	`8`	`Genome Assembly`
Original file line number	Diff line number	Diff line change
`@@ -4,5 +4,5 @@ https://github.com/birollab/GapPredict`
`4`	`4`
`5`	`5`
`6`	`6`
`7`		`-LSTM character-level language model for genome gap filling`
	`7`	`+LSTM model for genome gap filling`
`8`	`8`	`Genome Assembly`
Original file line number	Diff line number	Diff line change
`@@ -4,5 +4,5 @@ https://github.com/birollab/goldpolish`
`4`	`4`
`5`	`5`
`6`	`6`
`7`		`-Genome sequence polisher with long sequencing reads`
	`7`	`+Genome sequence polisher w/long reads`
`8`	`8`	`Genome Assembly`