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warrenlrwarrenlr
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update software blurbs github URLs
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‎_includes/software-content.html‎

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<tr><td><img class="software-logo" src="assets/logos/transparent.png"><span class="software-title">BioBloom Tools <a href="https://github.com/birollab/biobloom"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center;"><div class="downloadinfo"><br>{% include linuxbrew-icon.html%}brew install brewsci/bio/biobloomtools<br>{% include bioconda-icon.html%}conda install -c bioconda biobloomtools<br>{% include docker-icon.html%}docker run quay.io/biocontainers/biobloomtools</div></div><p style="padding-top:0">Memory efficient sequence read mapping with Bloom filters</p></td>
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<td><img class="software-logo" src="assets/logos/btllib.png"><span class="software-title">btllib <a href="https://github.com/bcgsc/btllib"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center;"><div class="downloadinfo"><br>{% include bioconda-icon.html%}conda install -c bioconda btllib<br>{% include docker-icon.html%}docker run quay.io/biocontainers/btllib</div></div><p style="padding-top:0">Genomic sequence processing common code C++ library, with Python API</p></td></tr>
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<td><img class="software-logo" src="assets/logos/btllib.png"><span class="software-title">btllib <a href="https://github.com/birollab/btllib"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center;"><div class="downloadinfo"><br>{% include bioconda-icon.html%}conda install -c bioconda btllib<br>{% include docker-icon.html%}docker run quay.io/biocontainers/btllib</div></div><p style="padding-top:0">Genomic sequence processing common code C++ library, with Python API</p></td></tr>
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<tr><td><img class="software-logo" src="assets/logos/transparent.png"><span class="software-title">ChopStitch <a href="https://github.com/birollab/ChopStitch"><img class="git" src="assets/githubicon.svg"></a></span><p style="padding-top:0">De novo exon prediction and splice graph construction</p></td>
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<tr><td><img class="software-logo" src="assets/logos/pass-logo.png"><span class="software-title">PASS <a href="https://github.com/birollab/pass"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center;"><div class="downloadinfo"><br>{% include bioconda-icon.html%}conda install -c bioconda pass<br>{% include docker-icon.html%}docker run quay.io/biocontainers/pass</div></div><p style="padding-top:0">Protein Assembler with Short [peptide] Sequences</p></td>
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<td><img class="software-logo" src="assets/logos/transparent.png"><span class="software-title">PAVFinder <a href="https://github.com/bcgsc/pavfinder"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center;"><div class="downloadinfo"><br>{% include bioconda-icon.html%}conda install -c bioconda pavfinder<br>{% include docker-icon.html%}docker run quay.io/biocontainers/pavfinder</div></div><p style="padding-top:0">Python package to identify structural variants from de novo assemblies</p></td></tr>
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<td><img class="software-logo" src="assets/logos/transparent.png"><span class="software-title">PAVFinder <a href="https://github.com/birollab/pavfinder"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center;"><div class="downloadinfo"><br>{% include bioconda-icon.html%}conda install -c bioconda pavfinder<br>{% include docker-icon.html%}docker run quay.io/biocontainers/pavfinder</div></div><p style="padding-top:0">Python package to identify structural variants from de novo assemblies</p></td></tr>
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<tr><td><img class="software-logo" src="assets/logos/peekseq-logo.png"><span class="software-title">peekseq <a href="https://github.com/birollab/peekseq"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center;"><div class="downloadinfo"><br>{% include bioconda-icon.html%}conda install -c bioconda peekseq<br>{% include docker-icon.html%}docker run quay.io/biocontainers/peekseq</div></div><p style="padding-top:0">De novo protein-coding potential predictor</p></td>
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<tr><td><img class="software-logo" src="assets/logos/ssake-logo.png"><span class="software-title">SSAKE <a href="https://github.com/birollab/SSAKE"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center;"><div class="downloadinfo"><br>{% include bioconda-icon.html%}conda install -c bioconda ssake<br>{% include docker-icon.html%}docker run quay.io/biocontainers/ssake</div></div><p style="padding-top:0">De novo Genome Assembler with Short Sequence Reads</p></td>
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<td><img class="software-logo" src="assets/logos/transparent.png"><span class="software-title">Straglr <a href="https://github.com/bcgsc/straglr"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center;"><div class="downloadinfo"><br>{% include bioconda-icon.html%}conda install -c bioconda straglr<br>{% include docker-icon.html%}docker run quay.io/biocontainers/straglr</div></div><p style="padding-top:0">Short-tandem repeat genotyping using long reads</p></td></tr>
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<td><img class="software-logo" src="assets/logos/transparent.png"><span class="software-title">Straglr <a href="https://github.com/birollab/straglr"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center;"><div class="downloadinfo"><br>{% include bioconda-icon.html%}conda install -c bioconda straglr<br>{% include docker-icon.html%}docker run quay.io/biocontainers/straglr</div></div><p style="padding-top:0">Short-tandem repeat genotyping using long reads</p></td></tr>
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<tr><td><img class="software-logo" src="assets/logos/tamperlogo.png"><span class="software-title">tAMPer <a href="https://github.com/birollab/tAMPer"><img class="git" src="assets/githubicon.svg"></a></span><p style="padding-top:0">AMP toxicity prediction with a structure-aware deep learning model</p></td>
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‎softwareblurbs/btllib.txt‎

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btllib.png
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btllib
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https://github.com/bcgsc/btllib
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https://github.com/birollab/btllib
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conda install -c bioconda btllib
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docker run quay.io/biocontainers/btllib

‎softwareblurbs/pavfinder.txt‎

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transparent.png
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PAVFinder
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https://github.com/bcgsc/pavfinder
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https://github.com/birollab/pavfinder
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conda install -c bioconda pavfinder
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docker run quay.io/biocontainers/pavfinder

‎softwareblurbs/straglr.txt‎

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transparent.png
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Straglr
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https://github.com/bcgsc/straglr
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https://github.com/birollab/straglr
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conda install -c bioconda straglr
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docker run quay.io/biocontainers/straglr

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