From 358c8a69313990d2db5fdc0a6ff60ccf77a0d224 Mon Sep 17 00:00:00 2001
From: "Adam R. Jensen" <39184289+AdamRJensen@users.noreply.github.com>
Date: Sun, 21 Jun 2026 13:32:41 +0200
Subject: [PATCH 1/5] Fix marimo example

---
 docs/examples/quality/example.py                | 2 +-
 {docs/source/notebooks => notebooks}/example.py | 0
 2 files changed, 1 insertion(+), 1 deletion(-)
 rename {docs/source/notebooks => notebooks}/example.py (100%)

diff --git a/docs/examples/quality/example.py b/docs/examples/quality/example.py
index 796a479..dcf24a3 100644
--- a/docs/examples/quality/example.py
+++ b/docs/examples/quality/example.py
@@ -2,7 +2,7 @@
 Multiplot
 =========
 
-.. marimo:: notebooks/example.py
+.. marimo:: example.py
    :height: 800px
    :width: 100%
    :theme: light
diff --git a/docs/source/notebooks/example.py b/notebooks/example.py
similarity index 100%
rename from docs/source/notebooks/example.py
rename to notebooks/example.py

From 54f2e9efe65be71a9c999db610b62e73e1526387 Mon Sep 17 00:00:00 2001
From: "Adam R. Jensen" <39184289+AdamRJensen@users.noreply.github.com>
Date: Sun, 21 Jun 2026 13:42:43 +0200
Subject: [PATCH 2/5] Fix linter

---
 notebooks/example.py | 2 +-
 pyproject.toml       | 3 +++
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/notebooks/example.py b/notebooks/example.py
index 38a4262..aa47544 100644
--- a/notebooks/example.py
+++ b/notebooks/example.py
@@ -69,4 +69,4 @@ def __(mo):
 
 
 if __name__ == "__main__":
-    app.run()
\ No newline at end of file
+    app.run()
diff --git a/pyproject.toml b/pyproject.toml
index b925a08..04440f0 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -67,6 +67,9 @@ Issues = "https://github.com/assessingsolar/solarpy/issues"
 Repository = "https://github.com/assessingsolar/solarpy.git"
 Changelog = "https://github.com/assessingsolar/solarpy/blob/main/docs/source/whatsnew.md"
 
+[tool.ruff.lint.per-file-ignores]
+"notebooks/*.py" = ["F811"]
+
 [tool.pytest.ini_options]
 addopts = "--cov=solarpy --cov-fail-under=1 --cov-report=term-missing --doctest-modules"
 pythonpath = ["src"]

From 235045b224e7a84dc82c22299f4258d2f79deb3c Mon Sep 17 00:00:00 2001
From: "Adam R. Jensen" <39184289+AdamRJensen@users.noreply.github.com>
Date: Sun, 21 Jun 2026 13:48:44 +0200
Subject: [PATCH 3/5] Fix notebook path

---
 docs/examples/quality/example.rst        | 9 ---------
 {notebooks => docs/notebooks}/example.py | 0
 docs/source/conf.py                      | 3 ++-
 3 files changed, 2 insertions(+), 10 deletions(-)
 delete mode 100644 docs/examples/quality/example.rst
 rename {notebooks => docs/notebooks}/example.py (100%)

diff --git a/docs/examples/quality/example.rst b/docs/examples/quality/example.rst
deleted file mode 100644
index b0719bd..0000000
--- a/docs/examples/quality/example.rst
+++ /dev/null
@@ -1,9 +0,0 @@
-Multiplot
----------
-
-Visualizing automatic quality checks can reveal patterns and recoverable data.
-
-.. marimo:: notebooks/example.py
-   :height: 800px
-   :width: 100%
-   :theme: light
diff --git a/notebooks/example.py b/docs/notebooks/example.py
similarity index 100%
rename from notebooks/example.py
rename to docs/notebooks/example.py
diff --git a/docs/source/conf.py b/docs/source/conf.py
index 76565b0..ac1e5d9 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -39,7 +39,8 @@
     "sphinx_marimo",  # for including interactive marimo notebooks
 ]
 
-marimo_notebook_dir = "notebooks"  # Directory containing .py Marimo notebooks
+# Directory containing Marimo notebooks, relative to conf.py file
+marimo_notebook_dir = "../notebooks"
 
 myst_enable_extensions = ["colon_fence"]  # for sphinx-design
 

From 4c6e1573c135d3f60e71234b80a3f13718be5337 Mon Sep 17 00:00:00 2001
From: "Adam R. Jensen" <39184289+AdamRJensen@users.noreply.github.com>
Date: Sun, 21 Jun 2026 13:49:34 +0200
Subject: [PATCH 4/5] Fix ruff lint path

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 04440f0..4816483 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -68,7 +68,7 @@ Repository = "https://github.com/assessingsolar/solarpy.git"
 Changelog = "https://github.com/assessingsolar/solarpy/blob/main/docs/source/whatsnew.md"
 
 [tool.ruff.lint.per-file-ignores]
-"notebooks/*.py" = ["F811"]
+"docs/notebooks/*.py" = ["F811"]
 
 [tool.pytest.ini_options]
 addopts = "--cov=solarpy --cov-fail-under=1 --cov-report=term-missing --doctest-modules"

From 383157a6e22d27bdaf5277f922b431bb0d694b19 Mon Sep 17 00:00:00 2001
From: "Adam R. Jensen" <39184289+AdamRJensen@users.noreply.github.com>
Date: Sun, 21 Jun 2026 13:58:59 +0200
Subject: [PATCH 5/5] Format lint for flake8 and not ruff

---
 .flake8        | 1 +
 pyproject.toml | 3 ---
 2 files changed, 1 insertion(+), 3 deletions(-)

diff --git a/.flake8 b/.flake8
index e81a59c..b371821 100644
--- a/.flake8
+++ b/.flake8
@@ -4,3 +4,4 @@ per-file-ignores =
     # sphinx-gallery examples use `# %%` section breaks, so imports
     # are not necessarily at the top of the file
     docs/examples/*.py:E402
+    docs/notebooks/*.py:F811
diff --git a/pyproject.toml b/pyproject.toml
index 4816483..b925a08 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -67,9 +67,6 @@ Issues = "https://github.com/assessingsolar/solarpy/issues"
 Repository = "https://github.com/assessingsolar/solarpy.git"
 Changelog = "https://github.com/assessingsolar/solarpy/blob/main/docs/source/whatsnew.md"
 
-[tool.ruff.lint.per-file-ignores]
-"docs/notebooks/*.py" = ["F811"]
-
 [tool.pytest.ini_options]
 addopts = "--cov=solarpy --cov-fail-under=1 --cov-report=term-missing --doctest-modules"
 pythonpath = ["src"]