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pgalibarovpgalibarov
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Merge pull request #101 from AnyBody/update_scaling_tutorials
Update scaling tutorials
2 parents 18c2286 + 32c9724 commit ca8b0e8

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‎Scaling/Downloads/lesson3d.Main.any‎

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// Todo: Write a small description of your model here
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Main = {
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// The actual body model goes in this folder
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AnyFolder MyModel = {
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// Global Reference Frame
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AnyFixedRefFrame GlobalRef = {
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// Todo: Add points for grounding of the model here
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}; // Global reference frame
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// Todo. Add the model elements such as
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// segments, joints, and muscles here.
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AnySeg SourceFemur =
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{
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Mass = 0; Jii = {0, 0, 0};
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AnyDrawSurf Surface =
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{
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FileName = "SourceFemur.stl";
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RGB = {222,202,176}/256;
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};
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AnyDrawSurf SurfaceMorphed =
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{
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FileName = "SourceFemur.stl";
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AnyFunTransform3D &ref = ..MyTransform3;
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};
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AnyDrawSurf SurfaceMorphedRBF =
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{
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FileName = "SourceFemur.stl";
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AnyFunTransform3D &ref = ..MyRBFTransform;
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RGB={1,0,0};
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};
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AnyDrawSurf SurfaceMorphedSTL =
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{
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FileName = "SourceFemur.stl";
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AnyFunTransform3D &ref = ..MySTLTransform;
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RGB={0,0,1};
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};
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};
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AnySeg TargetFemur =
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{
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Mass = 0; Jii = {0, 0, 0};
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AnyDrawSurf Surface =
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{
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FileName = "TargetFemur.stl";
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RGB = {0,1,0};
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};
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};
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AnyFunTransform3DLin2 MyTransform =
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{
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//PreTransforms = {};
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Points0 =
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{{-0.00906139, 0.36453, 0.0175591}, // fovea capitis
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{0.0358368, -0.0100391, -0.0162062}, // lateral anterior condyle
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{0.0295267, -0.0112881, 0.0194889}, // medial anterior condyle
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{0.0282045, 0.157599, -0.0172379}, // anterior mid shaft
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{-0.0245689, -0.00701566, -0.0238393}, // lateral posterior condyle
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{-0.0320739, -0.00877602, 0.0244234}};// medial posterior condyle
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Points1 =
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{{0.289913,0.420538,0.0138931}, // fovea capitis
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{0.322038,0.433232,-0.378636}, // lateral anterior condyle
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{0.289309,0.426839,-0.372994}, // medial anterior condyle
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{0.328859,0.425856,-0.175012}, // anterior mid shaft
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{0.306293,0.487243,-0.370319}, // lateral posterior condyle
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{0.261891,0.47585,-0.372696}}; // medial posterior condyle
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Mode = VTK_LANDMARK_AFFINE;
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};
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AnyFunTransform3DLin2 MyTransform2 = {
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Points0 = .MyTransform.Points1;
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Points1 = .MyTransform.Points0;
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Mode = VTK_LANDMARK_RIGIDBODY;
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};
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AnyFunTransform3DIdentity MyTransform3 =
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{
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PreTransforms = {&.MyTransform/*,&.MyTransform2*/};
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};
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AnyFunTransform3DRBF MyRBFTransform =
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{
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PreTransforms = {&.MyTransform};
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PolynomDegree = 1;
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RBFDef.Type = RBF_Triharmonic;
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Points0 = {
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{-0.00920594, 0.36459700, 0.0174376}, // fovea capitis
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{ 0.03691960, -0.01011610, -0.0197803}, // anterior lateral condyle
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{ 0.03001110, -0.00998133, 0.0186877}, // anterior medial condyle
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{ 0.02009270, 0.34511400, -0.0387426}, // anterior greater trochanter point
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{ 0.02783850, 0.18320400, -0.0217463}, // anterior shaft point
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{-0.02461770, -0.00623515, -0.0231383}, // posterior lateral condyle
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{-0.03211040, -0.00908290, 0.0246153}, // posterior medial condyle
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{-0.02643670, 0.35630800, 0.0014140}, // posterior head point
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{ 0.01780310, 0.36194400, 0.0059740}, // anterior head point
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{-0.00197744, 0.38387300, -0.0031698}, // superior head point
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{-0.00316772, 0.34248600, 0.0114698}, // inferior head point
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{-0.02469710, 0.30335600, -0.0171113}, // medial lesser trochanter
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{-0.00969883, 0.34826800, -0.0462823}, // distal trochanteric fossa
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{-0.01959660, 0.36243100, -0.0441186}, // proximal posterior greater trochanter
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{-0.00084335, 0.32253400, -0.0641596}, // distal trochanteric fossa
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{-0.00431680, 0.35912600, 0.0036940} // femoral COR
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};
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PointNames = {
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"Medial_Head_Point",
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"Anterior_LateralCondyle_Point",
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"Anterior_MedialCondyle_Point",
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"Anterior_GreaterTrochanter_Point",
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"Anterior_Shaft_Point",
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"Posterior_LateralCondyle_Point",
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"Posterior_MedialCondyle_Point",
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"Posterior_Head_Point",
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"Anterior_Head_Point",
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"Proximal_Head_Point",
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"Infeior_Head_Point",
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"Medial_LesserTrochanter_Point",
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"Distal_TrochantericFossa_Point",
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"Proximal_Posterior_GreaterTrochanter_Point",
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"Lateral_Lesser_Trochanter_Point",
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"Femoral_COR"
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};
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Points1 = {
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{ 0.2900, 0.4205, 0.0139},
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{ 0.3220, 0.4332,-0.3786},
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{ 0.2893, 0.4268,-0.3730},
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{ 0.3599, 0.4429,-0.0050},
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{ 0.3289, 0.4259,-0.1750},
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{ 0.3062, 0.4872,-0.3703},
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{ 0.2619, 0.4759,-0.3727},
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{ 0.2900, 0.4405, 0.0139},
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{ 0.3200, 0.4095, 0.0134},
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{ 0.3100, 0.4295, 0.0314},
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{ 0.2983, 0.4196,-0.0066},
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{ 0.3089, 0.4599,-0.0355},
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{ 0.3349, 0.4579, 0.0050},
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{ 0.3329, 0.4679, 0.0175},
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{ 0.3519, 0.4599,-0.0355},
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{ 0.3075, 0.4235, 0.0139}
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};
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BoundingBox =
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{
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Type = BB_Cartesian;
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ScaleXYZ = {2, 2, 2};
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DivisionFactorXYZ = 5*{1, 1, 1};
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};
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BoundingBoxOnOff = On;
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};
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AnyFunTransform3DSTL MySTLTransform =
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{
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PreTransforms = {&.MyRBFTransform};
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PolynomDegree = 1;
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RBFDef.Type = RBF_Triharmonic;
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AnyFixedRefFrame Input = {
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AnySurfSTL SourceSurf = {
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FileName = "SourceFemur.stl";
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ScaleXYZ = {1, 1, 1};
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};
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AnySurfSTL TargetSurf = {
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FileName = "TargetFemur.stl";
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ScaleXYZ = {1, 1, 1};
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};
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};
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SurfaceObjects0 = {&Input.SourceSurf};
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SurfaceObjects1 = {&Input.TargetSurf};
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//FileName0 = "SourceFemur.stl"; // such definition was used previously
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//FileName1 = "TargetFemur.stl"; // such definition was used previously
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NumPoints = 1000;
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BoundingBox.ScaleXYZ = {2, 2, 2};
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BoundingBox.DivisionFactorXYZ = {1, 1, 1};
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BoundingBoxOnOff = On;
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};
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}; // MyModel
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// The study: Operations to be performed on the model
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AnyBodyStudy MyStudy = {
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AnyFolder &Model = .MyModel;
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Gravity = {0.0, -9.81, 0.0};
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};
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}; // Main
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// Todo: Write a small description of your model here
2+
3+
Main = {
4+
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// The actual body model goes in this folder
6+
AnyFolder MyModel = {
7+
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// Global Reference Frame
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AnyFixedRefFrame GlobalRef = {
10+
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// Todo: Add points for grounding of the model here
12+
13+
}; // Global reference frame
14+
15+
// Todo. Add the model elements such as
16+
// segments, joints, and muscles here.
17+
18+
AnySeg SourceFemur =
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{
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Mass = 0; Jii = {0, 0, 0};
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AnyDrawSurf Surface =
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{
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FileName = "SourceFemur.stl";
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RGB = {222,202,176}/256;
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Opacity=0.3;
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};
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AnyDrawSurf SurfaceMorphed =
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{
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FileName = "SourceFemur.stl";
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AnyFunTransform3D &ref = ..MyTransform3;
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};
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AnyDrawSurf SurfaceMorphedRBF =
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{
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FileName = "SourceFemur.stl";
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AnyFunTransform3D &ref = ..MyRBFTransform;
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RGB={1,0,0};
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};
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AnyDrawSurf SurfaceMorphedSTL =
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{
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FileName = "SourceFemur.stl";
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AnyFunTransform3D &ref = ..MySTLTransform;
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RGB={0,0,1};
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};
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};
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AnySeg TargetFemur =
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{
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Mass = 0; Jii = {0, 0, 0};
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AnyDrawSurf Surface =
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{
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FileName = "TargetFemur.stl";
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RGB = {256,256,0}/256;
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};
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};
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AnyFunTransform3DLin2 MyTransform =
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{
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//PreTransforms = {};
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Points0 =
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{{-0.00906139, 0.36453, 0.0175591}, // fovea capitis
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{0.0358368, -0.0100391, -0.0162062}, // lateral anterior condyle
63+
{0.0295267, -0.0112881, 0.0194889}, // medial anterior condyle
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{0.0282045, 0.157599, -0.0172379}, // anterior mid shaft
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{-0.0245689, -0.00701566, -0.0238393}, // lateral posterior condyle
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{-0.0320739, -0.00877602, 0.0244234}};// medial posterior condyle
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Points1 =
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{{0.289913,0.420538,0.0138931}, // fovea capitis
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{0.322038,0.433232,-0.378636}, // lateral anterior condyle
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{0.289309,0.426839,-0.372994}, // medial anterior condyle
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{0.328859,0.425856,-0.175012}, // anterior mid shaft
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{0.306293,0.487243,-0.370319}, // lateral posterior condyle
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{0.261891,0.47585,-0.372696}}; // medial posterior condyle
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Mode = VTK_LANDMARK_AFFINE;
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};
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AnyFunTransform3DLin2 MyTransform2 = {
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Points0 = .MyTransform.Points1;
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Points1 = .MyTransform.Points0;
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Mode = VTK_LANDMARK_RIGIDBODY;
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};
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AnyFunTransform3DIdentity MyTransform3 =
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{
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PreTransforms = {&.MyTransform};
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};
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AnyFunTransform3DRBF MyRBFTransform =
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{
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PreTransforms = {&.MyTransform};
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PolynomDegree = 1;
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RBFDef.Type = RBF_Triharmonic;
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Points0 = {
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{-0.00920594, 0.36459700, 0.0174376}, // fovea capitis
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{ 0.03691960, -0.01011610, -0.0197803}, // anterior lateral condyle
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{ 0.03001110, -0.00998133, 0.0186877}, // anterior medial condyle
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{ 0.02009270, 0.34511400, -0.0387426}, // anterior greater trochanter point
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{ 0.02783850, 0.18320400, -0.0217463}, // anterior shaft point
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{-0.02461770, -0.00623515, -0.0231383}, // posterior lateral condyle
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{-0.03211040, -0.00908290, 0.0246153}, // posterior medial condyle
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{-0.02643670, 0.35630800, 0.0014140}, // posterior head point
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{ 0.01780310, 0.36194400, 0.0059740}, // anterior head point
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{-0.00197744, 0.38387300, -0.0031698}, // superior head point
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{-0.00316772, 0.34248600, 0.0114698}, // inferior head point
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{-0.02469710, 0.30335600, -0.0171113}, // medial lesser trochanter
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{-0.00969883, 0.34826800, -0.0462823}, // distal trochanteric fossa
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{-0.01959660, 0.36243100, -0.0441186}, // proximal posterior greater trochanter
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{-0.00084335, 0.32253400, -0.0641596}, // distal trochanteric fossa
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{-0.00431680, 0.35912600, 0.0036940} // femoral COR
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};
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PointNames = {
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"Medial_Head_Point",
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"Anterior_LateralCondyle_Point",
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"Anterior_MedialCondyle_Point",
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"Anterior_GreaterTrochanter_Point",
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"Anterior_Shaft_Point",
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"Posterior_LateralCondyle_Point",
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"Posterior_MedialCondyle_Point",
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"Posterior_Head_Point",
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"Anterior_Head_Point",
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"Proximal_Head_Point",
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"Infeior_Head_Point",
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"Medial_LesserTrochanter_Point",
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"Distal_TrochantericFossa_Point",
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"Proximal_Posterior_GreaterTrochanter_Point",
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"Lateral_Lesser_Trochanter_Point",
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"Femoral_COR"
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};
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Points1 = {
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{ 0.2900, 0.4205, 0.0139},
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{ 0.3220, 0.4332,-0.3786},
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{ 0.2893, 0.4268,-0.3730},
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{ 0.3599, 0.4429,-0.0050},
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{ 0.3289, 0.4259,-0.1750},
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{ 0.3062, 0.4872,-0.3703},
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{ 0.2619, 0.4759,-0.3727},
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{ 0.2900, 0.4405, 0.0139},
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{ 0.3200, 0.4095, 0.0134},
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{ 0.3100, 0.4295, 0.0314},
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{ 0.2983, 0.4196,-0.0066},
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{ 0.3089, 0.4599,-0.0355},
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{ 0.3349, 0.4579, 0.0050},
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{ 0.3329, 0.4679, 0.0175},
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{ 0.3519, 0.4599,-0.0355},
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{ 0.3075, 0.4235, 0.0139}
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};
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BoundingBox =
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{
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Type = BB_Cartesian;
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ScaleXYZ = {2, 2, 2};
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DivisionFactorXYZ = 5*{1, 1, 1};
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};
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BoundingBoxOnOff = On;
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};
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AnyFunTransform3DSTL MySTLTransform =
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{
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PreTransforms = {&.MyRBFTransform};
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PolynomDegree = 1;
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RBFDef.Type = RBF_Triharmonic;
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AnyFixedRefFrame Input = {
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AnySurfSTL SourceSurf = {
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FileName = "SourceFemur.stl";
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ScaleXYZ = {1, 1, 1};
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};
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AnySurfSTL TargetSurf = {
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FileName = "TargetFemur.stl";
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ScaleXYZ = {1, 1, 1};
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};
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};
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SurfaceObjects0 = {&Input.SourceSurf};
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SurfaceObjects1 = {&Input.TargetSurf};
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//FileName0 = "SourceFemur.stl"; // such definition was used previously
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//FileName1 = "TargetFemur.stl"; // such definition was used previously
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NumPoints = 1000;
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BoundingBox.ScaleXYZ = {2, 2, 2};
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BoundingBox.DivisionFactorXYZ = {1, 1, 1};
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BoundingBoxOnOff = On;
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};
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}; // MyModel
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// The study: Operations to be performed on the model
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AnyBodyStudy MyStudy = {
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AnyFolder &Model = .MyModel;
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Gravity = {0.0, -9.81, 0.0};
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};
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}; // Main

‎Scaling/_static/lesson3/image1.png‎

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‎Scaling/_static/lesson3/image5.png‎

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‎Scaling/_static/lesson3/image6.png‎

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