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sangyusangyu
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Integration with Forest plot
1. multi.ipynb was re-written to enable integration with forest_plot. * MultiContrast (mc) object data loading now incorporates Jonny's thorough data validations from forest_plot() * mc object now has a method forest_plot() that plots a forest_plot from 1-D mc objects using existing forest_plot code. 2. 10-multicontrast.ipynb tutorial edited accordingly. TODO: add unit test for mc
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4 files changed

Lines changed: 1295 additions & 310 deletions

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‎dabest/_modidx.py‎

Lines changed: 22 additions & 4 deletions
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@@ -110,11 +110,29 @@
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'dabest.multi': { 'dabest.multi.MultiContrast': ('API/multi.html#multicontrast', 'dabest/multi.py'),
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'dabest.multi.MultiContrast.__init__': ('API/multi.html#multicontrast.__init__', 'dabest/multi.py'),
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'dabest.multi.MultiContrast.__repr__': ('API/multi.html#multicontrast.__repr__', 'dabest/multi.py'),
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'dabest.multi.MultiContrast._check_contrasts': ( 'API/multi.html#multicontrast._check_contrasts',
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'dabest/multi.py'),
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'dabest.multi.MultiContrast._generate_default_labels': ( 'API/multi.html#multicontrast._generate_default_labels',
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'dabest.multi.MultiContrast._extract_data': ('API/multi.html#multicontrast._extract_data', 'dabest/multi.py'),
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'dabest.multi.MultiContrast._extract_single_contrast': ( 'API/multi.html#multicontrast._extract_single_contrast',
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'dabest/multi.py'),
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'dabest.multi._parse_contrast_structure': ('API/multi.html#_parse_contrast_structure', 'dabest/multi.py'),
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'dabest.multi.MultiContrast._validate_and_parse_structure': ( 'API/multi.html#multicontrast._validate_and_parse_structure',
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'dabest/multi.py'),
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'dabest.multi.MultiContrast._validate_ci_type': ( 'API/multi.html#multicontrast._validate_ci_type',
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'dabest/multi.py'),
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'dabest.multi.MultiContrast._validate_contrast_consistency': ( 'API/multi.html#multicontrast._validate_contrast_consistency',
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'dabest/multi.py'),
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'dabest.multi.MultiContrast._validate_effect_size': ( 'API/multi.html#multicontrast._validate_effect_size',
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'dabest/multi.py'),
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'dabest.multi.MultiContrast._validate_effect_size_compatibility': ( 'API/multi.html#multicontrast._validate_effect_size_compatibility',
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'dabest/multi.py'),
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'dabest.multi.MultiContrast._validate_individual_dabest_obj': ( 'API/multi.html#multicontrast._validate_individual_dabest_obj',
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'dabest/multi.py'),
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'dabest.multi.MultiContrast.bootstraps': ('API/multi.html#multicontrast.bootstraps', 'dabest/multi.py'),
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'dabest.multi.MultiContrast.confidence_intervals': ( 'API/multi.html#multicontrast.confidence_intervals',
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'dabest/multi.py'),
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'dabest.multi.MultiContrast.effect_sizes': ('API/multi.html#multicontrast.effect_sizes', 'dabest/multi.py'),
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'dabest.multi.MultiContrast.forest_plot': ('API/multi.html#multicontrast.forest_plot', 'dabest/multi.py'),
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'dabest.multi.MultiContrast.get_bootstrap_by_position': ( 'API/multi.html#multicontrast.get_bootstrap_by_position',
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'dabest/multi.py'),
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'dabest.multi.MultiContrast.vortexmap': ('API/multi.html#multicontrast.vortexmap', 'dabest/multi.py'),
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'dabest.multi._sample_bootstrap': ('API/multi.html#_sample_bootstrap', 'dabest/multi.py'),
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'dabest.multi._spiralize': ('API/multi.html#_spiralize', 'dabest/multi.py'),
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'dabest.multi.combine': ('API/multi.html#combine', 'dabest/multi.py'),

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