Updated dependencies and python version and tests

> dependencies updated
> python versions available now should be 3.10-3.13
> tests updated to now finally look like the actual plots

Author: JAnns98

.github/workflows/test-pytest.yaml

@@ -8,7 +8,7 @@ jobs:
       - uses: actions/checkout@v3
       - uses: actions/setup-python@v4
         with:
-          python-version: 3.9
+          python-version: 3.11
           cache: "pip"
           cache-dependency-path: settings.ini
       - name: Run pytest

dabest/__init__.py

@@ -11,4 +11,4 @@
     if not _NUMBA_COMPILED:
         precompile_all()
 
-__version__ = "2024.03.30"
+__version__ = "2025.02.28"

dabest/forest_plot.py

@@ -223,7 +223,7 @@ def get_kwargs(
         "widths": 0.5,
         "showextrema": False,
         "showmedians": False,
-        "vert": not horizontal
+        "vert": not horizontal,
     }
     if violin_kwargs is None:
         violin_kwargs = default_violin_kwargs

dabest/misc_tools.py

@@ -259,7 +259,7 @@ def get_kwargs(
     # Violinplot kwargs.
     default_violinplot_kwargs = {
         "widths": 0.5,
-        "vert": True,
+        "vert": 'vertical',
         "showextrema": False,
         "showmedians": False,
 

dabest/plot_tools.py

@@ -2703,7 +2703,7 @@ def _swarm(
                         bad_x_offsets.append(True)
                     else:
                         bad_x_offsets.append(False)
-                potential_x_offsets[bad_x_offsets] = np.infty
+                potential_x_offsets[bad_x_offsets] = np.inf
                 abs_potential_x_offsets = [abs(_) for _ in potential_x_offsets]
                 valid_x_offset = potential_x_offsets[
                     abs_potential_x_offsets.index(min(abs_potential_x_offsets))

dabest/plotter.py

@@ -77,7 +77,6 @@ def effectsize_df_plotter(effectsize_df: object, **plot_kwargs) -> matplotlib.fi
         set_xaxis_ticks_and_lims,
         show_legend,
         gardner_altman_adjustments,
-        # Cumming_Plot_Aesthetic_Adjustments,
         extract_group_summaries,
         draw_zeroline,
         redraw_dependent_spines,

nbs/01-getting_started.ipynb

@@ -64,15 +64,16 @@
    "source": [
     "\n",
     "\n",
-    "Python 3.10 is strongly recommended. DABEST has also been tested with Python 3.8 and onwards.\n",
+    "Python 3.11 is strongly recommended. DABEST has also been tested with Python 3.10 and onwards.\n",
     "\n",
     "In addition, the following packages are also required (listed with their minimal versions):\n",
     "\n",
-    "* [numpy 1.23.5](https://www.numpy.org)\n",
-    "* [scipy 1.9.3](https://www.scipy.org)\n",
-    "* [matplotlib 3.6.3](https://www.matplotlib.org)\n",
-    "* [pandas 1.5.0](https://pandas.pydata.org)\n",
-    "* [seaborn 0.12.2](https://seaborn.pydata.org)\n",
+    "* [numpy 2.1.3](https://www.numpy.org)\n",
+    "* [scipy 1.15.2](https://www.scipy.org)\n",
+    "* [matplotlib 3.10.0](https://www.matplotlib.org)\n",
+    "* [pandas 2.2.3](https://pandas.pydata.org)\n",
+    "* [seaborn 0.13.2](https://seaborn.pydata.org)\n",
+    "* [numba 0.61.0](https://numba.pydata.org)\n",
     "* [lqrt 0.3.3](https://github.com/alyakin314/lqrt)\n",
     "\n",
     "To obtain these package dependencies easily, it is highly recommended to download the [Anaconda](https://www.continuum.io/downloads) distribution of Python.\n"

nbs/API/forest_plot.ipynb

@@ -282,7 +282,7 @@
     "        \"widths\": 0.5,\n",
     "        \"showextrema\": False,\n",
     "        \"showmedians\": False,\n",
-    "        \"vert\": not horizontal\n",
+    "        \"vert\": not horizontal,\n",
     "    }\n",
     "    if violin_kwargs is None:\n",
     "        violin_kwargs = default_violin_kwargs\n",

nbs/API/misc_tools.ipynb

@@ -313,7 +313,7 @@
     "    # Violinplot kwargs.\n",
     "    default_violinplot_kwargs = {\n",
     "        \"widths\": 0.5,\n",
-    "        \"vert\": True,\n",
+    "        \"vert\": 'vertical',\n",
     "        \"showextrema\": False,\n",
     "        \"showmedians\": False,\n",
     "        \n",

nbs/API/plot_tools.ipynb

@@ -2761,7 +2761,7 @@
     "                        bad_x_offsets.append(True)\n",
     "                    else:\n",
     "                        bad_x_offsets.append(False)\n",
-    "                potential_x_offsets[bad_x_offsets] = np.infty\n",
+    "                potential_x_offsets[bad_x_offsets] = np.inf\n",
     "                abs_potential_x_offsets = [abs(_) for _ in potential_x_offsets]\n",
     "                valid_x_offset = potential_x_offsets[\n",
     "                    abs_potential_x_offsets.index(min(abs_potential_x_offsets))\n",